{
  "_id": "6a1a0d331d7bb097a09ccfe4",
  "Package": "CoverageView",
  "Type": "Package",
  "Title": "Coverage visualization package for R",
  "Version": "1.51.1",
  "Date": "2017-06-08",
  "Author": "Ernesto Lowy",
  "Maintainer": "Ernesto Lowy <ernestolowy@gmail.com>",
  "Description": "This package provides a framework for the visualization of\ngenome coverage profiles. It can be used for ChIP-seq\nexperiments, but it can be also used for genome-wide nucleosome\npositioning experiments or other experiment types where it is\nimportant to have a framework in order to inspect how the\ncoverage distributed across the genome",
  "biocViews": "ImmunoOncology,\nVisualization,RNASeq,ChIPSeq,Sequencing,Technology,Software",
  "License": "Artistic-2.0",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-29 21:57:12 UTC",
    "User": "root"
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  "Config/Bioconductor/UnsupportedPlatforms": "windows",
  "Config/pak/sysreqs": "make libbz2-dev liblzma-dev libxml2-dev libssl-dev\nxz-utils zlib1g-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-05-29 18:37:15 UTC",
  "RemoteUrl": "https://github.com/bioc/CoverageView",
  "RemoteRef": "HEAD",
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  "MD5sum": "fdbafd272389a34113d753e852e49a14",
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  "_type": "src",
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  "_created": "2026-05-29T21:57:12.000Z",
  "_published": "2026-05-29T22:03:31.828Z",
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    "email": "ernestolowy@gmail.com",
    "login": "elowy01",
    "description": "Data analyst in the Life Sciences. Python and R programmer",
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  "_selfowned": true,
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  "_updates": [
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    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
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  "_searchresults": 7,
  "_rbuild": "4.6.0",
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  "_cranurl": false,
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    "cov.matrix",
    "CoverageBamFile",
    "CoverageBigWigFile",
    "draw.heatmap",
    "draw.profile",
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    "genome.covplot.depth",
    "imageScale",
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      "title": "Example of a coverage matrix using the ChIP-seq data for the H3K36me3 histone modification experiment",
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      "rows": 200,
      "table": true,
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  "_help": [
    {
      "page": "CoverageView-package",
      "title": "Coverage visualization package for R",
      "topics": [
        "CoverageView-package",
        "CoverageView"
      ]
    },
    {
      "page": "cov.interval",
      "title": "arithmetic operation on an interval",
      "topics": [
        "cov.interval",
        "cov.interval,CoverageBamFile,CoverageBamFile-method",
        "cov.interval,CoverageBamFile-method",
        "cov.interval,CoverageBigWigFile,CoverageBigWigFile-method",
        "cov.interval,CoverageBigWigFile-method"
      ]
    },
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      "page": "cov.matrix",
      "title": "Compute a coverage matrix",
      "topics": [
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        "cov.matrix,ANY,ANY-method",
        "cov.matrix,ANY,missing-method"
      ]
    },
    {
      "page": "CoverageBamFile-class",
      "title": "Class '\"CoverageBamFile\"'",
      "topics": [
        "CoverageBamFile",
        "CoverageBamFile-class",
        "path,CoverageBamFile-method",
        "reads_mapped,CoverageBamFile-method",
        "run_type,CoverageBamFile-method",
        "show,CoverageBamFile-method"
      ]
    },
    {
      "page": "CoverageBigWigFile-class",
      "title": "Class '\"CoverageBigWigFile\"'",
      "topics": [
        "CoverageBigWigFile",
        "CoverageBigWigFile-class",
        "show,CoverageBigWigFile-method"
      ]
    },
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      "topics": [
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      ]
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      "topics": [
        "DF_H3K36me3_control"
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    },
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      "topics": [
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      ]
    },
    {
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      "topics": [
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    },
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      "page": "DF_H3K4me3_nopeaks_ratios",
      "title": "Example of a matrix with the ratio of the coverages using the ChIP-seq data for the H3K4me3 histone modification experiment",
      "topics": [
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      ]
    },
    {
      "page": "draw.heatmap",
      "title": "Draw a coverage heatmap",
      "topics": [
        "draw.heatmap",
        "draw.heatmap,list-method",
        "draw.heatmap,matrix-method"
      ]
    },
    {
      "page": "draw.profile",
      "title": "Draw a coverage profile",
      "topics": [
        "draw.profile",
        "draw.profile,list-method",
        "draw.profile,matrix-method"
      ]
    },
    {
      "page": "export.wig",
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        "export.wig,numeric-method"
      ]
    },
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      ]
    },
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      "topics": [
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