{
  "_id": "6ae74fad2e87f76f20acce75",
  "Package": "CompoundDb",
  "Type": "Package",
  "Title": "Creating and Using (Chemical) Compound Annotation Databases",
  "Version": "1.17.0",
  "Authors@R": "c(person(given = \"Jan\", family = \"Stanstrup\",\nemail = \"stanstrup@gmail.com\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0003-0541-7369\")),\nperson(given = \"Johannes\", family = \"Rainer\",\nemail = \"johannes.rainer@eurac.edu\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-6977-7147\")),\nperson(given = \"Josep M.\", family = \"Badia\",\nemail = \"josepmaria.badia@urv.cat\",\nrole = c(\"ctb\"),\ncomment = c(ORCID = \"0000-0002-5704-1124\")),\nperson(given = \"Roger\", family = \"Gine\",\nemail = \"alrgibe9@gmail.com\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0003-0288-9619\")),\nperson(given = \"Andrea\", family = \"Vicini\",\nemail = \"andrea.vicini@eurac.edu\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0001-9438-6909\")),\nperson(given = \"Prateek\", family = \"Arora\",\nemail = \"prateek.arora@unibe.ch\",\nrole = c(\"ctb\"),\ncomment = c(ORCID = \"0000-0003-0822-9240\"))\n)",
  "Description": "CompoundDb provides functionality to create and use\n(chemical) compound annotation databases from a variety of\ndifferent sources such as LipidMaps, HMDB, ChEBI or MassBank.\nThe database format allows to store in addition MS/MS spectra\nalong with compound information. The package provides also a\nbackend for Bioconductor's Spectra package and allows thus to\nmatch experimetal MS/MS spectra against MS/MS spectra in the\ndatabase. Databases can be stored in SQLite format and are thus\nportable.",
  "URL": "https://github.com/RforMassSpectrometry/CompoundDb",
  "BugReports": "https://github.com/RforMassSpectrometry/CompoundDb/issues",
  "biocViews": "MassSpectrometry, Metabolomics, Annotation",
  "VignetteBuilder": "knitr",
  "License": "Artistic-2.0",
  "RoxygenNote": "7.3.3",
  "Roxygen": "list(markdown=TRUE)",
  "Encoding": "UTF-8",
  "Collate": "'AllGenerics.R' 'AnnotationFilters.R' 'createCompDbPackage.R'\n'CompDb.R' 'CompDb-methods.R' 'IonDb.R' 'IonDb-methods.R'\n'MsBackendCompDb-functions.R' 'MsBackendCompDb.R'\n'query-engine.R' 'spectrum-import-functions.R'\n'utility-functions.R'",
  "Config/pak/sysreqs": "cmake make libicu-dev libpng-dev librsvg2-dev\nlibuv1-dev libxml2-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:57:44 UTC",
  "RemoteUrl": "https://github.com/bioc/CompoundDb",
  "RemoteRef": "HEAD",
  "RemoteSha": "6e74c028a85109fc9f7374c148a7102be4fa5e8c",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-11-01 13:17:00 UTC",
    "User": "root"
  },
  "Author": "Jan Stanstrup [aut] (ORCID: <https://orcid.org/0000-0003-0541-7369>),\nJohannes Rainer [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-6977-7147>),\nJosep M. Badia [ctb] (ORCID: <https://orcid.org/0000-0002-5704-1124>),\nRoger Gine [aut] (ORCID: <https://orcid.org/0000-0003-0288-9619>),\nAndrea Vicini [aut] (ORCID: <https://orcid.org/0000-0001-9438-6909>),\nPrateek Arora [ctb] (ORCID: <https://orcid.org/0000-0003-0822-9240>)",
  "Maintainer": "Johannes Rainer <johannes.rainer@eurac.edu>",
  "_user": "bioc",
  "_type": "src",
  "_file": "CompoundDb_1.17.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/fc1afaedc0aae5d101dc13c4c4d57207012dcc47c1274e6d297afad4fdb34e11",
  "_filesize": 1009445,
  "_sha256": "fc1afaedc0aae5d101dc13c4c4d57207012dcc47c1274e6d297afad4fdb34e11",
  "_expires": "2027-02-09T14:41:47.000Z",
  "_created": "2026-11-01T13:17:00.000Z",
  "_published": "2026-11-01T14:41:49.061Z",
  "_upstream": "https://github.com/bioc/CompoundDb",
  "_status": "success",
  "_maintainer": {
    "name": "Johannes Rainer",
    "email": "johannes.rainer@eurac.edu",
    "login": "jorainer",
    "mastodon": "@jorainer@fediscience.org",
    "bluesky": "@jorainer.bsky.social",
    "linkedin": "in/jorainer",
    "orcid": "0000-0002-6977-7147",
    "description": "Computational Mass Spectrometry and Metabolomics, mostly; love R coding and Emacs; member of the Bioconductor Community Advisory Board.",
    "uuid": 5506112
  },
  "_jobs": [
    {
      "job": 124859870567,
      "time": 161,
      "config": "bioc-checks",
      "r": "4.6.2",
      "check": "NOTE",
      "artifact": "13086460608"
    },
    {
      "job": 124859870634,
      "time": 292,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "13086620061"
    },
    {
      "job": 124859870646,
      "time": 345,
      "config": "linux-release-x86_64",
      "r": "4.6.2",
      "check": "OK",
      "artifact": "13085736951"
    },
    {
      "job": 124859870600,
      "time": 130,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "13087638819"
    },
    {
      "job": 124859870524,
      "time": 203,
      "config": "macos-release-arm64",
      "r": "4.6.2",
      "check": "OK",
      "artifact": "13087842020"
    },
    {
      "job": 124857308748,
      "time": 272,
      "config": "source",
      "r": "4.6.2",
      "check": "OK",
      "artifact": "13084773883"
    },
    {
      "job": 124859870537,
      "time": 156,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "13085517223"
    },
    {
      "job": 124859870601,
      "time": 318,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "13085208444"
    },
    {
      "job": 124859870578,
      "time": 342,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "13085480703"
    },
    {
      "job": 124859870575,
      "time": 278,
      "config": "windows-release-x86_64",
      "r": "4.6.2",
      "check": "OK",
      "artifact": "13084499641"
    }
  ],
  "_bioccheck": {
    "error": 0,
    "warning": 0,
    "note": 6
  },
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/41308989916",
  "_commit": {
    "id": "6e74c028a85109fc9f7374c148a7102be4fa5e8c",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777381064
  },
  "_distro": "resolute",
  "_host": "GitHub-Actions",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Depends"
    },
    {
      "package": "AnnotationFilter",
      "role": "Depends"
    },
    {
      "package": "S4Vectors",
      "role": "Depends"
    },
    {
      "package": "BiocGenerics",
      "role": "Imports"
    },
    {
      "package": "ChemmineR",
      "role": "Imports"
    },
    {
      "package": "tibble",
      "role": "Imports"
    },
    {
      "package": "jsonlite",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "DBI",
      "role": "Imports"
    },
    {
      "package": "dbplyr",
      "role": "Imports"
    },
    {
      "package": "RSQLite",
      "role": "Imports"
    },
    {
      "package": "Biobase",
      "role": "Imports"
    },
    {
      "package": "ProtGenerics",
      "version": ">= 1.35.3",
      "role": "Imports"
    },
    {
      "package": "xml2",
      "role": "Imports"
    },
    {
      "package": "IRanges",
      "role": "Imports"
    },
    {
      "package": "Spectra",
      "version": ">= 1.15.10",
      "role": "Imports"
    },
    {
      "package": "MsCoreUtils",
      "role": "Imports"
    },
    {
      "package": "MetaboCoreUtils",
      "role": "Imports"
    },
    {
      "package": "BiocParallel",
      "role": "Imports"
    },
    {
      "package": "stringi",
      "role": "Imports"
    },
    {
      "package": "data.table",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "BiocStyle",
      "version": ">= 2.5.19",
      "role": "Suggests"
    },
    {
      "package": "MsBackendMgf",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 3,
  "_updates": [
    {
      "week": "2026-03",
      "n": 2
    },
    {
      "week": "2026-05",
      "n": 1
    },
    {
      "week": "2026-10",
      "n": 2
    },
    {
      "week": "2026-12",
      "n": 1
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.17.0",
      "bioc": "3.24",
      "repository": "bioc"
    },
    {
      "branch": "release",
      "version": "1.16.0",
      "bioc": "3.23",
      "repository": "bioc"
    }
  ],
  "_topics": [
    "massspectrometry",
    "metabolomics",
    "annotation",
    "databases",
    "mass-spectrometry"
  ],
  "_stars": 20,
  "_contributors": [
    {
      "user": "jorainer",
      "count": 239,
      "uuid": 5506112
    },
    {
      "user": "stanstrup",
      "count": 16,
      "uuid": 4532682
    },
    {
      "user": "jwokaty",
      "count": 14,
      "uuid": 1744257
    },
    {
      "user": "andreavicini",
      "count": 9,
      "uuid": 36991461
    },
    {
      "user": "rogerginber",
      "count": 3,
      "uuid": 45530914
    },
    {
      "user": "jmbadia",
      "count": 2,
      "uuid": 13347859
    },
    {
      "user": "nturaga",
      "count": 2,
      "uuid": 2746443
    },
    {
      "user": "pratarora",
      "count": 2,
      "uuid": 15521391
    },
    {
      "user": "adafede",
      "count": 1,
      "uuid": 44283913
    }
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 482,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 1078,
    "source": "https://www.bioconductor.org/packages/stats/bioc/CompoundDb"
  },
  "_devurl": "https://github.com/rformassspectrometry/compounddb",
  "_searchresults": 97,
  "_abi": {
    "exports": [
      {
        "key": "CompoundDb::CompDb",
        "hash": "a56dfc6bdba22b8e"
      },
      {
        "key": "CompoundDb::CompoundIdFilter",
        "hash": "a0d8d28b736f3acc"
      },
      {
        "key": "CompoundDb::DBIConnectionOrNULL",
        "hash": "03f3ccb5fa7de36a"
      },
      {
        "key": "CompoundDb::DataFrameOrEquivalent",
        "hash": "4f1c4f9574fd9dba"
      },
      {
        "key": "CompoundDb::ExactmassFilter",
        "hash": "e67f3fea8945c5b9"
      },
      {
        "key": "CompoundDb::FormulaFilter",
        "hash": "504edbf60d6b5379"
      },
      {
        "key": "CompoundDb::InchiFilter",
        "hash": "2f4454bd554a43f2"
      },
      {
        "key": "CompoundDb::InchikeyFilter",
        "hash": "a8801bc4eb553623"
      },
      {
        "key": "CompoundDb::IonAdductFilter",
        "hash": "9e1c524900acad27"
      },
      {
        "key": "CompoundDb::IonDb",
        "hash": "7ad9f59b6ea78792"
      },
      {
        "key": "CompoundDb::IonIdFilter",
        "hash": "c5ff833eb79d2333"
      },
      {
        "key": "CompoundDb::IonMzFilter",
        "hash": "5e93e31759b40386"
      },
      {
        "key": "CompoundDb::IonRtFilter",
        "hash": "0ac877728e142d90"
      },
      {
        "key": "CompoundDb::MsBackendCompDb",
        "hash": "caad76330fda421b"
      },
      {
        "key": "CompoundDb::MsmsMzRangeMaxFilter",
        "hash": "d66b92be0c5fde7e"
      },
      {
        "key": "CompoundDb::MsmsMzRangeMinFilter",
        "hash": "bc0aee912bef1355"
      },
      {
        "key": "CompoundDb::NameFilter",
        "hash": "aa7c7d3ab0b23c26"
      },
      {
        "key": "CompoundDb::SpectrumIdFilter",
        "hash": "548b1d7b6f210f36"
      },
      {
        "key": "CompoundDb::generic:IonDb",
        "hash": "19887e9264bbafb6"
      },
      {
        "key": "CompoundDb::generic:compoundVariables",
        "hash": "d51b0435e575faa4"
      },
      {
        "key": "CompoundDb::generic:deleteCompound",
        "hash": "3e79e249a067dddb"
      },
      {
        "key": "CompoundDb::generic:deleteIon",
        "hash": "f5be17b36dab11e1"
      },
      {
        "key": "CompoundDb::generic:deleteSpectra",
        "hash": "8f4ccda8f2eb278d"
      },
      {
        "key": "CompoundDb::generic:insertCompound",
        "hash": "b1fd8fe33343febd"
      },
      {
        "key": "CompoundDb::generic:insertIon",
        "hash": "a971ec5a06a1acc4"
      },
      {
        "key": "CompoundDb::generic:insertSpectra",
        "hash": "d893112dd2865f47"
      },
      {
        "key": "CompoundDb::generic:ionVariables",
        "hash": "2a9528d24a1ca72f"
      },
      {
        "key": "CompoundDb::generic:mass2mz",
        "hash": "82a685dec3f096a8"
      },
      {
        "key": "CompoundDb::numericOrDataFrameOrEquivalent",
        "hash": "14bde72fd8f4b222"
      }
    ],
    "imports": [
      {
        "key": "AnnotationFilter::AnnotationFilter",
        "hash": "52853f058a79bf6b"
      },
      {
        "key": "AnnotationFilter::CharacterFilter",
        "hash": "5dbf6d6420a4a746"
      },
      {
        "key": "AnnotationFilter::DoubleFilter",
        "hash": "98da0bf2434efb64"
      },
      {
        "key": "AnnotationFilter::generic:supportedFilters",
        "hash": "8a7063e36eb7ab91"
      },
      {
        "key": "BiocGenerics::generic:dbconn",
        "hash": "d11436b189efe324"
      },
      {
        "key": "ProtGenerics::generic:backendBpparam",
        "hash": "42e79fb5d98efa40"
      },
      {
        "key": "ProtGenerics::generic:backendInitialize",
        "hash": "bfc89c8a6990d0ce"
      },
      {
        "key": "ProtGenerics::generic:compounds",
        "hash": "a3cf01cb7c3b4014"
      },
      {
        "key": "ProtGenerics::generic:dataStorage",
        "hash": "e0f310d99253bf4a"
      },
      {
        "key": "ProtGenerics::generic:extractByIndex",
        "hash": "4a6240668bd8e916"
      },
      {
        "key": "ProtGenerics::generic:intensity<-",
        "hash": "a9f9f16ede19ff8c"
      },
      {
        "key": "ProtGenerics::generic:ions",
        "hash": "210502700c28850d"
      },
      {
        "key": "ProtGenerics::generic:mz<-",
        "hash": "9d17a2894d528a92"
      },
      {
        "key": "ProtGenerics::generic:peaksData",
        "hash": "e49026384cce82a1"
      },
      {
        "key": "ProtGenerics::generic:peaksVariables",
        "hash": "fa8a37a534eac553"
      },
      {
        "key": "ProtGenerics::generic:spectraData",
        "hash": "9309e875845317bf"
      },
      {
        "key": "ProtGenerics::generic:spectraNames",
        "hash": "88f2b2fdf194b967"
      },
      {
        "key": "ProtGenerics::generic:spectraNames<-",
        "hash": "8567acfcabfa13de"
      },
      {
        "key": "ProtGenerics::generic:spectraVariables",
        "hash": "662c9914a7a6861e"
      },
      {
        "key": "ProtGenerics::generic:tic",
        "hash": "7e0ee9e3414c182d"
      },
      {
        "key": "S4Vectors::generic:metadata",
        "hash": "08b92b4e67da1af1"
      },
      {
        "key": "Spectra::MsBackend",
        "hash": "f0934da3d81a3802"
      },
      {
        "key": "Spectra::MsBackendCached",
        "hash": "6ec80a5eba03c577"
      },
      {
        "key": "Spectra::generic:Spectra",
        "hash": "2844322da6a27373"
      }
    ]
  },
  "_rbuild": "4.6.2",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/CompoundDb.html",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md"
  ],
  "_homeurl": "https://github.com/rformassspectrometry/compounddb",
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "addJoinDefinition",
    "backendInitialize",
    "CompDb",
    "compound_tbl_lipidblast",
    "compound_tbl_sdf",
    "CompoundIdFilter",
    "compounds",
    "compoundVariables",
    "copyCompDb",
    "createCompDb",
    "createCompDbPackage",
    "dataStorage",
    "dbconn",
    "deleteCompound",
    "deleteIon",
    "deleteSpectra",
    "emptyCompDb",
    "ExactmassFilter",
    "expandMzIntensity",
    "extractByIndex",
    "FormulaFilter",
    "hasMsMsSpectra",
    "import_mona_sdf",
    "InchiFilter",
    "InchikeyFilter",
    "insertCompound",
    "insertIon",
    "insertSpectra",
    "intensity<-",
    "IonAdductFilter",
    "IonDb",
    "IonIdFilter",
    "IonMzFilter",
    "IonRtFilter",
    "ions",
    "ionVariables",
    "make_metadata",
    "mass2mz",
    "metadata",
    "MsBackendCompDb",
    "msms_spectra_hmdb",
    "msms_spectra_mona",
    "MsmsMzRangeMaxFilter",
    "MsmsMzRangeMinFilter",
    "mz<-",
    "NameFilter",
    "peaksData",
    "peaksVariables",
    "show",
    "Spectra",
    "spectraData",
    "spectraNames",
    "spectraNames<-",
    "spectraVariables",
    "SpectrumIdFilter",
    "src_compdb",
    "supportedFilters",
    "tables",
    "tic"
  ],
  "_help": [
    {
      "page": "addJoinDefinition",
      "title": "Expand a CompDb database with additional, related tables",
      "topics": [
        "addJoinDefinition"
      ]
    },
    {
      "page": "CompDb",
      "title": "Simple compound (metabolite) databases",
      "topics": [
        "CompDb",
        "CompDb-class",
        "compounds",
        "compounds,CompDb-method",
        "compoundVariables",
        "compoundVariables,CompDb-method",
        "copyCompDb",
        "dbconn,CompDb-method",
        "deleteCompound",
        "deleteCompound,CompDb-method",
        "deleteCompound,IonDb-method",
        "deleteSpectra",
        "deleteSpectra,CompDb-method",
        "hasMsMsSpectra",
        "insertCompound",
        "insertCompound,CompDb-method",
        "insertSpectra",
        "insertSpectra,CompDb,Spectra-method",
        "mass2mz",
        "mass2mz,ANY-method",
        "mass2mz,CompDb-method",
        "metadata,CompDb-method",
        "show",
        "show,CompDb-method",
        "Spectra,CompDb-method",
        "spectraVariables,CompDb-method",
        "src_compdb",
        "supportedFilters,CompDb-method",
        "tables"
      ]
    },
    {
      "page": "compound_tbl_lipidblast",
      "title": "Extract compound data from LipidBlast",
      "concept": [
        "compound table creation functions"
      ],
      "topics": [
        "compound_tbl_lipidblast"
      ]
    },
    {
      "page": "compound_tbl_sdf",
      "title": "Extract compound data from a file in SDF format",
      "concept": [
        "compound table creation functions"
      ],
      "topics": [
        "compound_tbl_sdf"
      ]
    },
    {
      "page": "createCompDb",
      "title": "Create a CompDb database",
      "topics": [
        "createCompDb",
        "createCompDbPackage",
        "emptyCompDb",
        "make_metadata"
      ]
    },
    {
      "page": "expandMzIntensity",
      "title": "Expand m/z and intensity values in a data.frame",
      "topics": [
        "expandMzIntensity"
      ]
    },
    {
      "page": "Filter-classes",
      "title": "Filters supported by CompDb and IonDb",
      "topics": [
        "CompoundIdFilter",
        "CompoundIdFilter-class",
        "ExactmassFilter",
        "ExactmassFilter-class",
        "Filter-classes",
        "FormulaFilter",
        "FormulaFilter-class",
        "InchiFilter",
        "InchiFilter-class",
        "InchikeyFilter",
        "InchikeyFilter-class",
        "IonAdductFilter",
        "IonAdductFilter-class",
        "IonIdFilter",
        "IonIdFilter-class",
        "IonMzFilter",
        "IonMzFilter-class",
        "IonRtFilter",
        "IonRtFilter-class",
        "MsmsMzRangeMaxFilter",
        "MsmsMzRangeMaxFilter-class",
        "MsmsMzRangeMinFilter",
        "MsmsMzRangeMinFilter-class",
        "NameFilter",
        "NameFilter-class",
        "SpectrumIdFilter",
        "SpectrumIdFilter-class"
      ]
    },
    {
      "page": "import_mona_sdf",
      "title": "Import compound and spectrum information from MoNa",
      "topics": [
        "import_mona_sdf"
      ]
    },
    {
      "page": "IonDb",
      "title": "IonDb: compound database with additional ion information",
      "topics": [
        "deleteIon",
        "deleteIon,IonDb-method",
        "insertIon",
        "insertIon,IonDb-method",
        "IonDb",
        "IonDb,character,CompDb-method",
        "IonDb,character,missing-method",
        "IonDb,CompDb,missing-method",
        "IonDb,DBIConnection,CompDb-method",
        "IonDb,DBIConnection,missing-method",
        "IonDb,missing,missing-method",
        "IonDb-class",
        "ions",
        "ions,IonDb-method",
        "ionVariables",
        "ionVariables,IonDb-method",
        "show,IonDb-method"
      ]
    },
    {
      "page": "MsBackendCompDb",
      "title": "CompDb-based MS spectrum backend",
      "topics": [
        "$<-,MsBackendCompDb-method",
        "backendBpparam,MsBackendCompDb-method",
        "backendInitialize,MsBackendCompDb-method",
        "dataStorage,MsBackendCompDb-method",
        "extractByIndex,MsBackendCompDb,ANY-method",
        "intensity<-,MsBackendCompDb-method",
        "MsBackendCompDb",
        "MsBackendCompDb-class",
        "mz<-,MsBackendCompDb-method",
        "peaksData,MsBackendCompDb-method",
        "peaksVariables,MsBackendCompDb-method",
        "show,MsBackendCompDb-method",
        "spectraData,MsBackendCompDb-method",
        "spectraNames,MsBackendCompDb-method",
        "spectraNames<-,MsBackendCompDb-method",
        "tic,MsBackendCompDb-method",
        "[,MsBackendCompDb,ANY-method"
      ]
    },
    {
      "page": "msms_spectra_hmdb",
      "title": "Import MS/MS spectra from HMDB xml files",
      "concept": [
        "spectrum data import functions."
      ],
      "topics": [
        "msms_spectra_hmdb"
      ]
    },
    {
      "page": "msms_spectra_mona",
      "title": "Import MS/MS spectra from MoNa",
      "concept": [
        "spectrum data import functions."
      ],
      "topics": [
        "msms_spectra_mona"
      ]
    }
  ],
  "_pkglogo": "https://github.com/bioc/CompoundDb/raw/HEAD/logo.png",
  "_readme": "https://github.com/bioc/CompoundDb/raw/HEAD/README.md",
  "_rundeps": [
    "AnnotationFilter",
    "base64enc",
    "BH",
    "Biobase",
    "BiocGenerics",
    "BiocParallel",
    "bit",
    "bit64",
    "bitops",
    "blob",
    "bslib",
    "cachem",
    "ChemmineR",
    "cli",
    "clue",
    "cluster",
    "codetools",
    "cpp11",
    "crosstalk",
    "data.table",
    "DBI",
    "dbplyr",
    "digest",
    "dplyr",
    "DT",
    "evaluate",
    "farver",
    "fastmap",
    "fontawesome",
    "formatR",
    "fs",
    "futile.logger",
    "futile.options",
    "generics",
    "GenomicRanges",
    "ggplot2",
    "glue",
    "gridExtra",
    "gtable",
    "highr",
    "htmltools",
    "htmlwidgets",
    "IRanges",
    "isoband",
    "jquerylib",
    "jsonlite",
    "knitr",
    "labeling",
    "lambda.r",
    "later",
    "lazyeval",
    "lifecycle",
    "magrittr",
    "MASS",
    "memoise",
    "MetaboCoreUtils",
    "mime",
    "MsCoreUtils",
    "otel",
    "pillar",
    "pkgconfig",
    "png",
    "promises",
    "ProtGenerics",
    "purrr",
    "R6",
    "rappdirs",
    "RColorBrewer",
    "Rcpp",
    "RCurl",
    "rjson",
    "rlang",
    "rmarkdown",
    "RSQLite",
    "rsvg",
    "S4Vectors",
    "S7",
    "sass",
    "scales",
    "Seqinfo",
    "snow",
    "Spectra",
    "stringi",
    "stringr",
    "tibble",
    "tidyr",
    "tidyselect",
    "tinytex",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr",
    "xfun",
    "xml2",
    "yaml"
  ],
  "_vignettes": [
    {
      "source": "create-compounddb.Rmd",
      "filename": "create-compounddb.html",
      "title": "Creating CompoundDb annotation resources",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Creating CompDb databases",
        "CompDb from HMDB data",
        "CompDb from custom data",
        "CompDb from MoNA data",
        "CompDb by sequentially filling with data",
        "Extending CompDb databases",
        "Session information"
      ],
      "created": "2017-10-31 08:06:50",
      "modified": "2026-01-12 14:42:47",
      "commits": 25
    },
    {
      "source": "CompoundDb-usage.Rmd",
      "filename": "CompoundDb-usage.html",
      "title": "Usage of Annotation Resources with the CompoundDb Package",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Installation",
        "General usage",
        "Querying compound annotations",
        "Additional functionality for CompDb databases",
        "Accessing and using MS/MS data",
        "Ion databases",
        "Session information",
        "References"
      ],
      "created": "2020-10-23 11:01:48",
      "modified": "2024-05-29 06:22:36",
      "commits": 11
    }
  ],
  "_score": 8.876722991548235,
  "_indexed": true,
  "_nocasepkg": "compounddb",
  "_universes": [
    "bioc",
    "jorainer",
    "rformassspectrometry"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.17.0",
      "date": "2026-11-01T13:42:34.000Z",
      "distro": "resolute",
      "commit": "6e74c028a85109fc9f7374c148a7102be4fa5e8c",
      "fileid": "https://r2.ropensci.org/94150a75b828b9b6e1153cd85ab3f9ce466400c0a345524f8f78895fc953271d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41308989916"
    },
    {
      "r": "4.6.2",
      "os": "linux",
      "version": "1.17.0",
      "date": "2026-11-01T13:43:11.000Z",
      "distro": "resolute",
      "commit": "6e74c028a85109fc9f7374c148a7102be4fa5e8c",
      "fileid": "https://r2.ropensci.org/71b486c553dac1944764f8c76c1f01d61d4aab9d36eb560c2d182c41f3cd2561",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41308989916"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.17.0",
      "date": "2026-11-01T14:37:47.000Z",
      "commit": "6e74c028a85109fc9f7374c148a7102be4fa5e8c",
      "fileid": "https://r2.ropensci.org/6e314264ddbf6cff2440bfec5ead2eb7d85841f27c48b91d44cb5117ea8240a7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41308989916"
    },
    {
      "r": "4.6.2",
      "os": "mac",
      "version": "1.17.0",
      "date": "2026-11-01T14:38:17.000Z",
      "commit": "6e74c028a85109fc9f7374c148a7102be4fa5e8c",
      "fileid": "https://r2.ropensci.org/d386b03c470c1ff9d83f609308a77f26e2bd09fbf4fa19ad0580508fe37b37a8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41308989916"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.17.0",
      "date": "2026-11-01T13:41:54.000Z",
      "commit": "6e74c028a85109fc9f7374c148a7102be4fa5e8c",
      "fileid": "https://r2.ropensci.org/995b609527cb26bd70a1ff28a6fed4c98cc0da9063b049c87119c72d350b05a4",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41308989916"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.17.0",
      "date": "2026-11-01T13:21:18.000Z",
      "commit": "6e74c028a85109fc9f7374c148a7102be4fa5e8c",
      "fileid": "https://r2.ropensci.org/0796ec6f60ceb788c982fcc8d4e373b08e501bc769f13fcfa9488b5a2555c786",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41308989916"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.17.0",
      "date": "2026-11-01T13:21:33.000Z",
      "commit": "6e74c028a85109fc9f7374c148a7102be4fa5e8c",
      "fileid": "https://r2.ropensci.org/0baf39a38521010a333e3740c493aa43f7dd2923100a634bd0e80d980237060e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41308989916"
    },
    {
      "r": "4.6.2",
      "os": "win",
      "version": "1.17.0",
      "date": "2026-11-01T13:21:06.000Z",
      "commit": "6e74c028a85109fc9f7374c148a7102be4fa5e8c",
      "fileid": "https://r2.ropensci.org/346eba51ead9d6b369dcdf54e71e196f7f82b3c642c5326dfdb2d97d4332b7f3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41308989916"
    }
  ]
}