{ "_id": "6a1ad5ff1d7bb097a09e579a", "Package": "ComplexHeatmap", "Type": "Package", "Title": "Make Complex Heatmaps", "Version": "2.29.0", "Date": "2026-01-30", "Authors@R": "person(\"Zuguang\", \"Gu\", email = \"guzuguang@suat-sz.edu.cn\", role = c(\"aut\", \"cre\"),\ncomment = c('ORCID'=\"0000-0002-7395-8709\"))", "VignetteBuilder": "knitr", "Description": "Complex heatmaps are efficient to visualize associations\nbetween different sources of data sets and reveal potential\npatterns. Here the ComplexHeatmap package provides a highly\nflexible way to arrange multiple heatmaps and supports various\nannotation graphics.", "biocViews": "Software, Visualization, Sequencing", "URL": "https://github.com/jokergoo/ComplexHeatmap,\nhttps://jokergoo.github.io/ComplexHeatmap-reference/book/", "License": "MIT + file LICENSE", "RoxygenNote": "7.2.3", "Config/pak/sysreqs": "libpng-dev perl", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:40:58 UTC", "RemoteUrl": "https://github.com/bioc/ComplexHeatmap", "RemoteRef": "HEAD", "RemoteSha": "d6cf9276a7a5703e5253ee4f70e8b6d64aa15762", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-30 08:47:39 UTC", "User": "root" }, "Author": "Zuguang Gu [aut, cre] (ORCID: )", "Maintainer": "Zuguang Gu ", "MD5sum": "ab2c04a2a979833867826c3784c9005c", "_user": "bioc", "_type": "src", "_file": "ComplexHeatmap_2.29.0.tar.gz", "_fileid": "a56b1805403dbedd12c497bd1587aa7722d6133a3e56479741ffd07f57e08dd0", "_filesize": 2521833, "_sha256": "a56b1805403dbedd12c497bd1587aa7722d6133a3e56479741ffd07f57e08dd0", "_created": "2026-05-30T08:47:39.000Z", "_published": "2026-05-30T12:20:15.367Z", "_jobs": [ { "job": 78637605804, "time": 235, "config": "bioc-checks", "r": "4.6.0", "check": "WARNING", "artifact": "7306966259" }, { "job": 78637605811, "time": 374, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7306980960" }, { "job": 78637605821, "time": 410, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7306984662" }, { "job": 78637605807, "time": 207, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7308115705" }, { "job": 78637605841, "time": 222, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7308118557" }, { "job": 78637368597, "time": 251, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7306942362" }, { "job": 78637605820, "time": 126, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7306955376" }, { "job": 78637605815, "time": 294, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7306972864" }, { "job": 78637605828, "time": 297, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7306973269" }, { "job": 78637605825, "time": 317, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7306975127" } ], "_bioccheck": { "error": 0, "warning": 4, "note": 20 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26679542231", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/ComplexHeatmap", "_commit": { "id": "d6cf9276a7a5703e5253ee4f70e8b6d64aa15762", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777380058 }, "_maintainer": { "name": "Zuguang Gu", "email": "guzuguang@suat-sz.edu.cn", "login": "jokergoo", "description": "A bioinformagician\n", "uuid": 449218, "orcid": "0000-0002-7395-8709" }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.0.0", "role": "Depends" }, { "package": "methods", "role": "Depends" }, { "package": "grid", "role": "Depends" }, { "package": "graphics", "role": "Depends" }, { "package": "stats", "role": "Depends" }, { "package": "grDevices", "role": "Depends" }, { "package": "circlize", "version": ">= 0.4.14", "role": "Imports" }, { "package": "GetoptLong", "role": "Imports" }, { "package": "colorspace", "role": "Imports" }, { "package": "clue", "role": "Imports" }, { "package": "RColorBrewer", "role": "Imports" }, { "package": "GlobalOptions", "version": ">= 0.1.0", "role": "Imports" }, { "package": "png", "role": "Imports" }, { "package": "digest", "role": "Imports" }, { "package": "IRanges", "role": "Imports" }, { "package": "matrixStats", "role": "Imports" }, { "package": "foreach", "role": "Imports" }, { "package": "doParallel", "role": "Imports" }, { "package": "codetools", "role": "Imports" }, { "package": "testthat", "version": ">= 1.0.0", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "markdown", "role": "Suggests" }, { "package": "dendsort", "role": "Suggests" }, { "package": "jpeg", "role": "Suggests" }, { "package": "tiff", "role": "Suggests" }, { "package": "fastcluster", "role": "Suggests" }, { "package": "EnrichedHeatmap", "role": "Suggests" }, { "package": "dendextend", "version": ">= 1.0.1", "role": "Suggests" }, { "package": "grImport", "role": "Suggests" }, { "package": "grImport2", "role": "Suggests" }, { "package": "glue", "role": "Suggests" }, { "package": "GenomicRanges", "role": "Suggests" }, { "package": "gridtext", "role": "Suggests" }, { "package": "pheatmap", "version": ">= 1.0.12", "role": "Suggests" }, { "package": "gridGraphics", "role": "Suggests" }, { "package": "gplots", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "Cairo", "role": "Suggests" }, { "package": "magick", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 187, "_updates": [ { "week": "2025-22", "n": 2 }, { "week": "2025-26", "n": 3 }, { "week": "2026-05", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "2.29.0", "bioc": "3.24" }, { "branch": "release", "version": "2.28.0", "bioc": "3.23" } ], "_topics": [ "software", "visualization", "sequencing", "clustering", "complex-heatmaps", "heatmap" ], "_stars": 1502, "_contributors": [ { "user": "jokergoo", "count": 1064, "uuid": 449218 }, { "user": "cola-recount2", "count": 194, "uuid": 49999269 }, { "user": "nturaga", "count": 14, "uuid": 2746443 }, { "user": "jwokaty", "count": 10, "uuid": 1744257 }, { "user": "dtenenba", "count": 8, "uuid": 2286826 }, { "user": "evanbiederstedt", "count": 4, "uuid": 6968193 }, { "user": "adrdufour", "count": 3, "uuid": 16325905 }, { "user": "link-ny", "count": 2, "uuid": 4392950 }, { "user": "vobencha", "count": 2, "uuid": 2466173 }, { "user": "trile965", "count": 2, "uuid": 11041356 }, { "user": "kieran-mace", "count": 2, "uuid": 18296227 }, { "user": "hpages", "count": 2, "uuid": 8810451 }, { "user": "asalt", "count": 1, "uuid": 11843940 }, { "user": "apeltzer", "count": 1, "uuid": 2359510 }, { "user": "hunter-github", "count": 1, "uuid": 9477484 }, { "user": "petehaitch", "count": 1, "uuid": 1049741 }, { "user": "sonali-bioc", "count": 1, "uuid": 6373953 }, { "user": "dtm2451", "count": 1, "uuid": 38870347 }, { "user": "emenzed", "count": 1, "uuid": 32233921 }, { "user": "skelly001", "count": 1, "uuid": 97435404 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 31598, "source": "https://www.bioconductor.org/packages/stats/bioc/ComplexHeatmap" }, "_mentions": 565, "_devurl": "https://github.com/jokergoo/complexheatmap", "_searchresults": 20352, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/ComplexHeatmap.html", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/jokergoo/complexheatmap", "_realowner": "bioc", "_cranurl": false, "_exports": [ "[.AnnotationFunction", "[.comb_mat", "[.gridtext", "[.Heatmap", "[.HeatmapAnnotation", "[.HeatmapList", "[.SingleAnnotation", "%v%", "+.AdditiveUnit", "add_heatmap", "AdditiveUnit", "adjust_dend_by_x", "adjust_heatmap_list", "alter_graphic", "anno_barplot", "anno_block", "anno_boxplot", "anno_customize", "anno_density", "anno_empty", "anno_histogram", "anno_horizon", "anno_image", "anno_joyplot", "anno_lines", "anno_link", "anno_mark", "anno_numeric", "anno_oncoprint_barplot", "anno_points", "anno_simple", "anno_summary", "anno_text", "anno_textbox", "anno_zoom", "annotation_axis_grob", "annotation_legend_size", "AnnotationFunction", "attach_annotation", "bar3D", "bin_genome", "c.ColorMapping", "c.HeatmapAnnotation", "cluster_between_groups", "cluster_within_group", "color_mapping_legend", "ColorMapping", "column_dend", "column_order", "columnAnnotation", "comb_degree", "comb_name", "comb_size", "compare_heatmap", "compare_heatmap.2", "compare_pheatmap", "complement_size", "component_height", "component_width", "copy_all", "decorate_annotation", "decorate_column_dend", "decorate_column_names", "decorate_column_title", "decorate_dend", "decorate_dimnames", "decorate_heatmap_body", "decorate_row_dend", "decorate_row_names", "decorate_row_title", "decorate_title", "default_axis_param", "default_get_type", "dend_heights", "dend_xy", "dendrogramGrob", "densityHeatmap", "dim.Heatmap", "dist2", "draw", "draw_annotation", "draw_annotation_legend", "draw_dend", "draw_dimnames", "draw_heatmap_body", "draw_heatmap_legend", "draw_heatmap_list", "draw_title", "extract_comb", "frequencyHeatmap", "full_comb_code", "get_color_mapping_list", "get_legend_param_list", "getXY_in_parent_vp", "grid.annotation_axis", "grid.boxplot", "grid.dendrogram", "grid.draw.Legends", "grid.textbox", "gt_render", "Heatmap", "heatmap_legend_size", "Heatmap3D", "HeatmapAnnotation", "HeatmapList", "height.AnnotationFunction", "height.Heatmap", "height.HeatmapAnnotation", "height.HeatmapList", "height.Legends", "height.SingleAnnotation", "height<-.AnnotationFunction", "height<-.HeatmapAnnotation", "height<-.SingleAnnotation", "heightDetails.annotation_axis", "heightDetails.legend", "heightDetails.legend_body", "heightDetails.packed_legends", "heightDetails.textbox", "ht_global_opt", "ht_opt", "ht_size", "is_abs_unit", "Legend", "Legends", "length.HeatmapAnnotation", "length.HeatmapList", "list_components", "list_to_matrix", "make_column_cluster", "make_comb_mat", "make_layout", "make_row_cluster", "map_to_colors", "max_text_height", "max_text_width", "merge_dendrogram", "names.HeatmapAnnotation", "names.HeatmapList", "names<-.HeatmapAnnotation", "ncol.Heatmap", "nobs.AnnotationFunction", "nobs.HeatmapAnnotation", "nobs.SingleAnnotation", "normalize_comb_mat", "normalize_genomic_signals_to_bins", "nrow.Heatmap", "oncoPrint", "order.comb_mat", "packLegend", "pheatmap", "pindex", "plot.Heatmap", "plot.HeatmapAnnotation", "plot.HeatmapList", "prepare", "print.comb_mat", "re_size", "restore_matrix", "row_anno_barplot", "row_anno_boxplot", "row_anno_density", "row_anno_histogram", "row_anno_points", "row_anno_text", "row_dend", "row_order", "rowAnnotation", "set_component_height", "set_component_width", "set_name", "set_name<-", "set_size", "SingleAnnotation", "size.AnnotationFunction", "size.HeatmapAnnotation", "size.SingleAnnotation", "size<-.AnnotationFunction", "size<-.HeatmapAnnotation", "size<-.SingleAnnotation", "smartAlign2", "str.comb_mat", "subset_gp", "subset_matrix_by_row", "subset_no", "subset_vector", "summary.Heatmap", "summary.HeatmapList", "t.comb_mat", "test_alter_fun", "textbox_grob", "unify_mat_list", "UpSet", "upset_left_annotation", "upset_right_annotation", "upset_top_annotation", "width.AnnotationFunction", "width.Heatmap", "width.HeatmapAnnotation", "width.HeatmapList", "width.Legends", "width.SingleAnnotation", "width<-.AnnotationFunction", "width<-.HeatmapAnnotation", "width<-.SingleAnnotation", "widthDetails.annotation_axis", "widthDetails.legend", "widthDetails.legend_body", "widthDetails.packed_legends", "widthDetails.textbox" ], "_help": [ { "page": "ComplexHeatmap-package", "title": "Make complex heatmaps", "topics": [ "ComplexHeatmap-package" ] }, { "page": "Extract.AnnotationFunction", "title": "Subset an AnnotationFunction Object", "topics": [ "Extract.AnnotationFunction", "[.AnnotationFunction" ] }, { "page": "Extract.comb_mat", "title": "Subset the Combination Matrix", "topics": [ "Extract.comb_mat", "[.comb_mat" ] }, { "page": "Extract.gridtext", "title": "Subset method of gridtext class", "topics": [ "Extract.gridtext", "[.gridtext" ] }, { "page": "Extract.Heatmap", "title": "Subset a Heatmap", "topics": [ "Extract.Heatmap", "[.Heatmap" ] }, { "page": "Extract.HeatmapAnnotation", "title": "Subset the HeatmapAnnotation object", "topics": [ "Extract.HeatmapAnnotation", "[.HeatmapAnnotation" ] }, { "page": "Extract.HeatmapList", "title": "Subset a HeatmapList object", "topics": [ "Extract.HeatmapList", "[.HeatmapList" ] }, { "page": "Extract.SingleAnnotation", "title": "Subset an SingleAnnotation Object", "topics": [ "Extract.SingleAnnotation", "[.SingleAnnotation" ] }, { "page": "pct_v_pct", "title": "Vertically Add Heatmaps or Annotations to a Heatmap List", "topics": [ "%v%", "pct_v_pct" ] }, { "page": "add.AdditiveUnit", "title": "Horizontally Add Heatmaps or Annotations to a Heatmap List", "topics": [ "+.AdditiveUnit", "add.AdditiveUnit" ] }, { "page": "add_heatmap-dispatch", "title": "Method dispatch page for add_heatmap", "topics": [ "add_heatmap" ] }, { "page": "add_heatmap-Heatmap-method", "title": "Add Heatmap to the Heatmap List", "topics": [ "add_heatmap,Heatmap-method" ] }, { "page": "add_heatmap-HeatmapAnnotation-method", "title": "Add Annotations or Heatmaps as a Heatmap List", "topics": [ "add_heatmap,HeatmapAnnotation-method" ] }, { "page": "add_heatmap-HeatmapList-method", "title": "Add heatmaps and row annotations to the heatmap list", "topics": [ "add_heatmap,HeatmapList-method" ] }, { "page": "AdditiveUnit", "title": "Constructor Method for AdditiveUnit Class", "topics": [ "AdditiveUnit" ] }, { "page": "AdditiveUnit-class", "title": "Class for Concatenating Heatmaps and Annotations", "topics": [ "AdditiveUnit-class" ] }, { "page": "adjust_dend_by_x", "title": "Adjust the Positions of nodes/leaves in the Dendrogram", "topics": [ "adjust_dend_by_x" ] }, { "page": "adjust_heatmap_list-HeatmapList-method", "title": "Adjust Heatmap List", "topics": [ "adjust_heatmap_list", "adjust_heatmap_list,HeatmapList-method" ] }, { "page": "alter_graphic", "title": "Automatically generate alter_fun", "topics": [ "alter_graphic" ] }, { "page": "anno_barplot", "title": "Barplot Annotation", "topics": [ "anno_barplot" ] }, { "page": "anno_block", "title": "Block annotation", "topics": [ "anno_block" ] }, { "page": "anno_boxplot", "title": "Boxplot Annotation", "topics": [ "anno_boxplot" ] }, { "page": "anno_customize", "title": "Customized annotation", "topics": [ "anno_customize" ] }, { "page": "anno_density", "title": "Density Annotation", "topics": [ "anno_density" ] }, { "page": "anno_empty", "title": "Empty Annotation", "topics": [ "anno_empty" ] }, { "page": "anno_histogram", "title": "Histogram Annotation", "topics": [ "anno_histogram" ] }, { "page": "anno_horizon", "title": "Horizon chart Annotation", "topics": [ "anno_horizon" ] }, { "page": "anno_image", "title": "Image Annotation", "topics": [ "anno_image" ] }, { "page": "anno_joyplot", "title": "Joyplot Annotation", "topics": [ "anno_joyplot" ] }, { "page": "anno_lines", "title": "Lines Annotation", "topics": [ "anno_lines" ] }, { "page": "anno_link", "title": "Link Annotation", "topics": [ "anno_link" ] }, { "page": "anno_mark", "title": "Link annotation with labels", "topics": [ "anno_mark" ] }, { "page": "anno_numeric", "title": "Numeric labels annotation", "topics": [ "anno_numeric" ] }, { "page": "anno_oncoprint_barplot", "title": "Barplot Annotation for oncoPrint", "topics": [ "anno_oncoprint_barplot" ] }, { "page": "anno_points", "title": "Points Annotation", "topics": [ "anno_points" ] }, { "page": "anno_simple", "title": "Simple Annotation", "topics": [ "anno_simple" ] }, { "page": "anno_summary", "title": "Summary Annotation", "topics": [ "anno_summary" ] }, { "page": "anno_text", "title": "Text Annotation", "topics": [ "anno_text" ] }, { "page": "anno_textbox", "title": "Text box annotations", "topics": [ "anno_textbox" ] }, { "page": "anno_zoom", "title": "Zoom annotation", "topics": [ "anno_zoom" ] }, { "page": "annotation_axis_grob", "title": "Grob for Annotation Axis", "topics": [ "annotation_axis_grob" ] }, { "page": "annotation_legend_size-HeatmapList-method", "title": "Size of the Annotation Legends", "topics": [ "annotation_legend_size", "annotation_legend_size,HeatmapList-method" ] }, { "page": "AnnotationFunction", "title": "Constructor of AnnotationFunction Class", "topics": [ "AnnotationFunction" ] }, { "page": "AnnotationFunction-class", "title": "The AnnotationFunction Class", "topics": [ "AnnotationFunction-class" ] }, { "page": "attach_annotation-Heatmap-method", "title": "Attach heatmap annotations to the heatmap", "topics": [ "attach_annotation", "attach_annotation,Heatmap-method" ] }, { "page": "bar3D", "title": "Draw 3D bars", "topics": [ "bar3D" ] }, { "page": "bin_genome", "title": "Bin the genome", "topics": [ "bin_genome" ] }, { "page": "c.ColorMapping", "title": "Concatenate A List of ColorMapping objects", "topics": [ "c.ColorMapping" ] }, { "page": "c.HeatmapAnnotation", "title": "Concatenate Heatmap Annotations", "topics": [ "c.HeatmapAnnotation" ] }, { "page": "cluster_between_groups", "title": "Cluster only between Groups", "topics": [ "cluster_between_groups" ] }, { "page": "cluster_within_group", "title": "Cluster within and between Groups", "topics": [ "cluster_within_group" ] }, { "page": "color_mapping_legend-ColorMapping-method", "title": "Draw Legend Based on Color Mapping", "topics": [ "color_mapping_legend", "color_mapping_legend,ColorMapping-method" ] }, { "page": "ColorMapping", "title": "Constructor Method for ColorMapping Class", "topics": [ "ColorMapping" ] }, { "page": "ColorMapping-class", "title": "Class for Color Mapping", "topics": [ "ColorMapping-class" ] }, { "page": "column_dend-dispatch", "title": "Method dispatch page for column_dend", "topics": [ "column_dend" ] }, { "page": "column_dend-Heatmap-method", "title": "Get Column Dendrograms from a Heatmap", "topics": [ "column_dend,Heatmap-method" ] }, { "page": "column_dend-HeatmapList-method", "title": "Get Column Dendrograms from a hHeatmap List", "topics": [ "column_dend,HeatmapList-method" ] }, { "page": "column_order-dispatch", "title": "Method dispatch page for column_order", "topics": [ "column_order" ] }, { "page": "column_order-Heatmap-method", "title": "Get Column Order from a Aeatmap List", "topics": [ "column_order,Heatmap-method" ] }, { "page": "column_order-HeatmapList-method", "title": "Get Column Order from a Heatmap List", "topics": [ "column_order,HeatmapList-method" ] }, { "page": "columnAnnotation", "title": "Construct Column Annotations", "topics": [ "columnAnnotation" ] }, { "page": "comb_degree", "title": "Degrees of the Combination sets", "topics": [ "comb_degree" ] }, { "page": "comb_name", "title": "Names of the Combination sets", "topics": [ "comb_name" ] }, { "page": "comb_size", "title": "Sizes of the Combination sets", "topics": [ "comb_size" ] }, { "page": "compare_heatmap", "title": "Compare heatmaps between stats::heatmap() and ComplexHeatmap::heatmap()", "topics": [ "compare_heatmap" ] }, { "page": "compare_heatmap.2", "title": "Compare heatmaps between gplots::heatmap.2() and ComplexHeatmap::heatmap()", "topics": [ "compare_heatmap.2" ] }, { "page": "compare_pheatmap", "title": "Compare heatmaps between pheatmap::pheatmap() and ComplexHeatmap::pheatmap()", "topics": [ "compare_pheatmap" ] }, { "page": "complement_size", "title": "Complement Set Size", "topics": [ "complement_size" ] }, { "page": "component_height-dispatch", "title": "Method dispatch page for component_height", "topics": [ "component_height" ] }, { "page": "component_height-Heatmap-method", "title": "Heights of Heatmap Components", "topics": [ "component_height,Heatmap-method" ] }, { "page": "component_height-HeatmapList-method", "title": "Height of Heatmap List Components", "topics": [ "component_height,HeatmapList-method" ] }, { "page": "component_width-dispatch", "title": "Method dispatch page for component_width", "topics": [ "component_width" ] }, { "page": "component_width-Heatmap-method", "title": "Widths of Heatmap Components", "topics": [ "component_width,Heatmap-method" ] }, { "page": "component_width-HeatmapList-method", "title": "Width of Heatmap List Components", "topics": [ "component_width,HeatmapList-method" ] }, { "page": "copy_all-AnnotationFunction-method", "title": "Copy the AnnotationFunction Object", "topics": [ "copy_all,AnnotationFunction-method" ] }, { "page": "copy_all-dispatch", "title": "Method dispatch page for copy_all", "topics": [ "copy_all" ] }, { "page": "copy_all-SingleAnnotation-method", "title": "Copy the SingleAnnotation object", "topics": [ "copy_all,SingleAnnotation-method" ] }, { "page": "decorate_annotation", "title": "Decorate Heatmap Annotation", "topics": [ "decorate_annotation" ] }, { "page": "decorate_column_dend", "title": "Decorate Heatmap Column Dendrograms", "topics": [ "decorate_column_dend" ] }, { "page": "decorate_column_names", "title": "Decorate Heatmap Column Names", "topics": [ "decorate_column_names" ] }, { "page": "decorate_column_title", "title": "Decorate Heatmap Column Titles", "topics": [ "decorate_column_title" ] }, { "page": "decorate_dend", "title": "Decorate Heatmap Dendrograms", "topics": [ "decorate_dend" ] }, { "page": "decorate_dimnames", "title": "Decorate Heatmap Dimension Names", "topics": [ "decorate_dimnames" ] }, { "page": "decorate_heatmap_body", "title": "Decorate Heatmap Bodies", "topics": [ "decorate_heatmap_body" ] }, { "page": "decorate_row_dend", "title": "Decorate Heatmap Row Dendrograms", "topics": [ "decorate_row_dend" ] }, { "page": "decorate_row_names", "title": "Decorate Heatmap Row Names", "topics": [ "decorate_row_names" ] }, { "page": "decorate_row_title", "title": "Decorate Heatmap Row Titles", "topics": [ "decorate_row_title" ] }, { "page": "decorate_title", "title": "Decorate Heatmap Titles", "topics": [ "decorate_title" ] }, { "page": "default_axis_param", "title": "The Default Parameters for Annotation Axis", "topics": [ "default_axis_param" ] }, { "page": "default_get_type", "title": "Default get_type for oncoPrint()", "topics": [ "default_get_type" ] }, { "page": "dend_heights", "title": "Height of the Dendrograms", "topics": [ "dend_heights" ] }, { "page": "dend_xy", "title": "Coordinates of the Dendrogram", "topics": [ "dend_xy" ] }, { "page": "dendrogramGrob", "title": "Grob for Dendrogram", "topics": [ "dendrogramGrob" ] }, { "page": "densityHeatmap", "title": "Visualize Density Distribution by Heatmap", "topics": [ "densityHeatmap" ] }, { "page": "dim.Heatmap", "title": "Dimension of the Heatmap", "topics": [ "dim.Heatmap" ] }, { "page": "dist2", "title": "Calculate Pairwise Distance from a Matrix", "topics": [ "dist2" ] }, { "page": "draw_annotation_legend-HeatmapList-method", "title": "Draw legends for All Annotations", "topics": [ "draw_annotation_legend", "draw_annotation_legend,HeatmapList-method" ] }, { "page": "draw_annotation-Heatmap-method", "title": "Draw Heatmap Annotations on the Heatmap", "topics": [ "draw_annotation", "draw_annotation,Heatmap-method" ] }, { "page": "draw_dend-Heatmap-method", "title": "Draw Heatmap Dendrograms", "topics": [ "draw_dend", "draw_dend,Heatmap-method" ] }, { "page": "draw_dimnames-Heatmap-method", "title": "Draw row names or column names", "topics": [ "draw_dimnames", "draw_dimnames,Heatmap-method" ] }, { "page": "draw_heatmap_body-Heatmap-method", "title": "Draw Heatmap Body", "topics": [ "draw_heatmap_body", "draw_heatmap_body,Heatmap-method" ] }, { "page": "draw_heatmap_legend-HeatmapList-method", "title": "Draw legends for All Heatmaps", "topics": [ "draw_heatmap_legend", "draw_heatmap_legend,HeatmapList-method" ] }, { "page": "draw_heatmap_list-HeatmapList-method", "title": "Draw the List of Heatmaps", "topics": [ "draw_heatmap_list", "draw_heatmap_list,HeatmapList-method" ] }, { "page": "draw_title-dispatch", "title": "Method dispatch page for draw_title", "topics": [ "draw_title" ] }, { "page": "draw_title-Heatmap-method", "title": "Draw Heatmap Title", "topics": [ "draw_title,Heatmap-method" ] }, { "page": "draw_title-HeatmapList-method", "title": "Draw Heatmap List Title", "topics": [ "draw_title,HeatmapList-method" ] }, { "page": "draw-AnnotationFunction-method", "title": "Draw the AnnotationFunction Object", "topics": [ "draw,AnnotationFunction-method" ] }, { "page": "draw-dispatch", "title": "Method dispatch page for draw", "topics": [ "draw" ] }, { "page": "draw-Heatmap-method", "title": "Draw a Single Heatmap", "topics": [ "draw,Heatmap-method" ] }, { "page": "draw-HeatmapAnnotation-method", "title": "Draw the Heatmap Annotations", "topics": [ "draw,HeatmapAnnotation-method" ] }, { "page": "draw-HeatmapList-method", "title": "Draw a list of heatmaps", "topics": [ "draw,HeatmapList-method" ] }, { "page": "draw-Legends-method", "title": "Draw the Legends", "topics": [ "draw,Legends-method" ] }, { "page": "draw-SingleAnnotation-method", "title": "Draw the Single Annotation", "topics": [ "draw,SingleAnnotation-method" ] }, { "page": "extract_comb", "title": "Extract Elements in a Combination set", "topics": [ "extract_comb" ] }, { "page": "frequencyHeatmap", "title": "Visualize Frequency Distribution by Heatmap", "topics": [ "frequencyHeatmap" ] }, { "page": "full_comb_code", "title": "Full set of code of combination sets", "topics": [ "full_comb_code" ] }, { "page": "get_color_mapping_list-HeatmapAnnotation-method", "title": "Get a List of ColorMapping objects", "topics": [ "get_color_mapping_list", "get_color_mapping_list,HeatmapAnnotation-method" ] }, { "page": "get_legend_param_list-HeatmapAnnotation-method", "title": "Get a List of Annotation Legend Parameters", "topics": [ "get_legend_param_list", "get_legend_param_list,HeatmapAnnotation-method" ] }, { "page": "getXY_in_parent_vp", "title": "Convert XY in a Parent Viewport", "topics": [ "getXY_in_parent_vp" ] }, { "page": "grid.annotation_axis", "title": "Draw Annotation Axis", "topics": [ "grid.annotation_axis" ] }, { "page": "grid.boxplot", "title": "Draw a Single Boxplot", "topics": [ "grid.boxplot" ] }, { "page": "grid.dendrogram", "title": "Draw the Dendrogram", "topics": [ "grid.dendrogram" ] }, { "page": "grid.draw.Legends", "title": "Draw the Legends", "topics": [ "grid.draw.Legends" ] }, { "page": "grid.textbox", "title": "Draw multiple texts in a box", "topics": [ "grid.textbox" ] }, { "page": "gt_render", "title": "Mark the text for the rendering by gridtext package", "topics": [ "gt_render" ] }, { "page": "Heatmap", "title": "Constructor method for Heatmap class", "topics": [ "Heatmap" ] }, { "page": "heatmap_legend_size-HeatmapList-method", "title": "Size of the Heatmap Legends", "topics": [ "heatmap_legend_size", "heatmap_legend_size,HeatmapList-method" ] }, { "page": "Heatmap-class", "title": "Class for a Single Heatmap", "topics": [ "Heatmap-class" ] }, { "page": "Heatmap3D", "title": "3D Heatmap", "topics": [ "Heatmap3D" ] }, { "page": "HeatmapAnnotation", "title": "Constructor Method for HeatmapAnnotation class", "topics": [ "HeatmapAnnotation" ] }, { "page": "HeatmapAnnotation-class", "title": "Class for Heatmap Annotations", "topics": [ "HeatmapAnnotation-class" ] }, { "page": "HeatmapList", "title": "Constructor method for HeatmapList class", "topics": [ "HeatmapList" ] }, { "page": "HeatmapList-class", "title": "Class for a list of heatmaps", "topics": [ "HeatmapList-class" ] }, { "page": "height.AnnotationFunction", "title": "Height of the AnnotationFunction Object", "topics": [ "height.AnnotationFunction" ] }, { "page": "height.Heatmap", "title": "Height of the Heatmap", "topics": [ "height.Heatmap" ] }, { "page": "height.HeatmapAnnotation", "title": "Height of the HeatmapAnnotation Object", "topics": [ "height.HeatmapAnnotation" ] }, { "page": "height.HeatmapList", "title": "Height of the Heatmap List", "topics": [ "height.HeatmapList" ] }, { "page": "height.Legends", "title": "Height of the Legends", "topics": [ "height.Legends" ] }, { "page": "height.SingleAnnotation", "title": "Height of the SingleAnnotation object", "topics": [ "height.SingleAnnotation" ] }, { "page": "heightAssign.AnnotationFunction", "title": "Assign the Height to the AnnotationFunction Object", "topics": [ "height<-.AnnotationFunction", "heightAssign.AnnotationFunction" ] }, { "page": "heightAssign.HeatmapAnnotation", "title": "Assign the Height to the HeatmapAnnotation Object", "topics": [ "height<-.HeatmapAnnotation", "heightAssign.HeatmapAnnotation" ] }, { "page": "heightAssign.SingleAnnotation", "title": "Assign the Height to the SingleAnnotation Object", "topics": [ "height<-.SingleAnnotation", "heightAssign.SingleAnnotation" ] }, { "page": "heightDetails.annotation_axis", "title": "Height for annotation_axis Grob", "topics": [ "heightDetails.annotation_axis" ] }, { "page": "heightDetails.legend", "title": "Grob height for packed_legends", "topics": [ "heightDetails.legend" ] }, { "page": "heightDetails.legend_body", "title": "Grob height for legend_body", "topics": [ "heightDetails.legend_body" ] }, { "page": "heightDetails.packed_legends", "title": "Grob height for packed_legends", "topics": [ "heightDetails.packed_legends" ] }, { "page": "heightDetails.textbox", "title": "Height for textbox grob", "topics": [ "heightDetails.textbox" ] }, { "page": "ht_global_opt", "title": "Global Options for Heatmaps", "topics": [ "ht_global_opt" ] }, { "page": "ht_opt", "title": "Global Options for Heatmaps", "topics": [ "ht_opt" ] }, { "page": "ht_size", "title": "Calculate the width and height of the heatmaps", "topics": [ "ht_size" ] }, { "page": "is_abs_unit", "title": "Test Whether it is an Absolute Unit", "topics": [ "is_abs_unit" ] }, { "page": "Legend", "title": "Make a Single Legend", "topics": [ "Legend" ] }, { "page": "Legends", "title": "Constructor method for Legends class", "topics": [ "Legends" ] }, { "page": "Legends-class", "title": "The Class for Legends", "topics": [ "Legends-class" ] }, { "page": "length.HeatmapAnnotation", "title": "Number of Annotations", "topics": [ "length.HeatmapAnnotation" ] }, { "page": "length.HeatmapList", "title": "Length of the HeatmapList object", "topics": [ "length.HeatmapList" ] }, { "page": "list_components", "title": "List All Heatmap Components", "topics": [ "list_components" ] }, { "page": "list_to_matrix", "title": "Convert a List of Sets to a Binary Matrix", "topics": [ "list_to_matrix" ] }, { "page": "make_column_cluster-Heatmap-method", "title": "Make Cluster on Columns", "topics": [ "make_column_cluster", "make_column_cluster,Heatmap-method" ] }, { "page": "make_comb_mat", "title": "Make a Combination Matrix for UpSet Plot", "topics": [ "make_comb_mat" ] }, { "page": "make_layout-dispatch", "title": "Method dispatch page for make_layout", "topics": [ "make_layout" ] }, { "page": "make_layout-Heatmap-method", "title": "Make the Layout of a Single Heatmap", "topics": [ "make_layout,Heatmap-method" ] }, { "page": "make_layout-HeatmapList-method", "title": "Make Layout for the Heatmap List", "topics": [ "make_layout,HeatmapList-method" ] }, { "page": "make_row_cluster-Heatmap-method", "title": "Make Cluster on Rows", "topics": [ "make_row_cluster", "make_row_cluster,Heatmap-method" ] }, { "page": "map_to_colors-ColorMapping-method", "title": "Map Values to Colors", "topics": [ "map_to_colors", "map_to_colors,ColorMapping-method" ] }, { "page": "max_text_height", "title": "Maximum Height of Text", "topics": [ "max_text_height" ] }, { "page": "max_text_width", "title": "Maximum Width of Text", "topics": [ "max_text_width" ] }, { "page": "merge_dendrogram", "title": "Merge Dendrograms", "topics": [ "merge_dendrogram" ] }, { "page": "names.HeatmapAnnotation", "title": "Annotation Names", "topics": [ "names.HeatmapAnnotation" ] }, { "page": "names.HeatmapList", "title": "Names of the heatmaps/annotations", "topics": [ "names.HeatmapList" ] }, { "page": "namesAssign.HeatmapAnnotation", "title": "Assign Annotation Names", "topics": [ "names<-.HeatmapAnnotation", "namesAssign.HeatmapAnnotation" ] }, { "page": "ncol.Heatmap", "title": "Number of Columns in the Heatmap", "topics": [ "ncol.Heatmap" ] }, { "page": "nobs.AnnotationFunction", "title": "Number of Observations", "topics": [ "nobs.AnnotationFunction" ] }, { "page": "nobs.HeatmapAnnotation", "title": "Number of Observations", "topics": [ "nobs.HeatmapAnnotation" ] }, { "page": "nobs.SingleAnnotation", "title": "Number of Observations", "topics": [ "nobs.SingleAnnotation" ] }, { "page": "normalize_comb_mat", "title": "Normalize a list of combination matrice", "topics": [ "normalize_comb_mat" ] }, { "page": "normalize_genomic_signals_to_bins", "title": "Overlap genomic signals to the genomic bins", "topics": [ "normalize_genomic_signals_to_bins" ] }, { "page": "nrow.Heatmap", "title": "Number of Rows in the Heatmap", "topics": [ "nrow.Heatmap" ] }, { "page": "oncoPrint", "title": "Make oncoPrint", "topics": [ "oncoPrint" ] }, { "page": "order.comb_mat", "title": "Order of the Combination Sets", "topics": [ "order.comb_mat" ] }, { "page": "packLegend", "title": "Pack Legends", "topics": [ "packLegend" ] }, { "page": "pheatmap", "title": "Translate pheatmap::pheatmap to ComplexHeatmap::Heatmap", "topics": [ "pheatmap" ] }, { "page": "pindex", "title": "Get Values in a Matrix by Pair-wise Indices", "topics": [ "pindex" ] }, { "page": "plot.Heatmap", "title": "Draw heatmap", "topics": [ "plot.Heatmap" ] }, { "page": "plot.HeatmapAnnotation", "title": "Draw heatmap annotations", "topics": [ "plot.HeatmapAnnotation" ] }, { "page": "plot.HeatmapList", "title": "Draw heatmap", "topics": [ "plot.HeatmapList" ] }, { "page": "prepare-Heatmap-method", "title": "Prepare the Heatmap", "topics": [ "prepare", "prepare,Heatmap-method" ] }, { "page": "print.comb_mat", "title": "Print the comb_mat Object", "topics": [ "print.comb_mat" ] }, { "page": "re_size-HeatmapAnnotation-method", "title": "Resize the Width or Height of Heatmap Annotations", "topics": [ "re_size", "re_size,HeatmapAnnotation-method" ] }, { "page": "restore_matrix", "title": "Restore the index vector to index matrix in layer_fun", "topics": [ "restore_matrix" ] }, { "page": "row_anno_barplot", "title": "Barplots as Row Annotation", "topics": [ "row_anno_barplot" ] }, { "page": "row_anno_boxplot", "title": "Boxplots as Row Annotation", "topics": [ "row_anno_boxplot" ] }, { "page": "row_anno_density", "title": "Density as Row Annotation", "topics": [ "row_anno_density" ] }, { "page": "row_anno_histogram", "title": "Histograms as Row Annotation", "topics": [ "row_anno_histogram" ] }, { "page": "row_anno_points", "title": "Points as Row Annotation", "topics": [ "row_anno_points" ] }, { "page": "row_anno_text", "title": "Text as Row Annotation", "topics": [ "row_anno_text" ] }, { "page": "row_dend-dispatch", "title": "Method dispatch page for row_dend", "topics": [ "row_dend" ] }, { "page": "row_dend-Heatmap-method", "title": "Get Row Dendrograms from a Heatmap", "topics": [ "row_dend,Heatmap-method" ] }, { "page": "row_dend-HeatmapList-method", "title": "Get Row Dendrograms from a Heatmap List", "topics": [ "row_dend,HeatmapList-method" ] }, { "page": "row_order-dispatch", "title": "Method dispatch page for row_order", "topics": [ "row_order" ] }, { "page": "row_order-Heatmap-method", "title": "Get Row Order from a Heatmap", "topics": [ "row_order,Heatmap-method" ] }, { "page": "row_order-HeatmapList-method", "title": "Get Row Order from a Heatmap List", "topics": [ "row_order,HeatmapList-method" ] }, { "page": "rowAnnotation", "title": "Construct Row Annotations", "topics": [ "rowAnnotation" ] }, { "page": "set_component_height-Heatmap-method", "title": "Set Height of Heatmap Component", "topics": [ "set_component_height", "set_component_height,Heatmap-method" ] }, { "page": "set_component_width-Heatmap-method", "title": "Set Width of Heatmap Component", "topics": [ "set_component_width", "set_component_width,Heatmap-method" ] }, { "page": "set_name", "title": "Set Names", "topics": [ "set_name" ] }, { "page": "set_nameAssign", "title": "Modify Set Names", "topics": [ "set_name<-", "set_nameAssign" ] }, { "page": "set_size", "title": "Set Sizes", "topics": [ "set_size" ] }, { "page": "show-AnnotationFunction-method", "title": "Print the AnnotationFunction Object", "topics": [ "show,AnnotationFunction-method" ] }, { "page": "show-ColorMapping-method", "title": "Print the ColorMapping Object", "topics": [ "show,ColorMapping-method" ] }, { "page": "show-dispatch", "title": "Method dispatch page for show", "topics": [ "show" ] }, { "page": "show-Heatmap-method", "title": "Draw the Single Heatmap with Defaults", "topics": [ "show,Heatmap-method" ] }, { "page": "show-HeatmapAnnotation-method", "title": "Print the HeatmapAnnotation object", "topics": [ "show,HeatmapAnnotation-method" ] }, { "page": "show-HeatmapList-method", "title": "Draw a list of heatmaps with default parameters", "topics": [ "show,HeatmapList-method" ] }, { "page": "show-SingleAnnotation-method", "title": "Print the SingleAnnotation object", "topics": [ "show,SingleAnnotation-method" ] }, { "page": "SingleAnnotation", "title": "Constructor Method for SingleAnnotation Class", "topics": [ "SingleAnnotation" ] }, { "page": "SingleAnnotation-class", "title": "Class for a Single Annotation", "topics": [ "SingleAnnotation-class" ] }, { "page": "size.AnnotationFunction", "title": "Size of the AnnotationFunction Object", "topics": [ "size.AnnotationFunction" ] }, { "page": "size.HeatmapAnnotation", "title": "Size of the HeatmapAnnotation Object", "topics": [ "size.HeatmapAnnotation" ] }, { "page": "size.SingleAnnotation", "title": "Size of the SingleAnnotation Object", "topics": [ "size.SingleAnnotation" ] }, { "page": "sizeAssign.AnnotationFunction", "title": "Assign the Size to the AnnotationFunction Object", "topics": [ "size<-.AnnotationFunction", "sizeAssign.AnnotationFunction" ] }, { "page": "sizeAssign.HeatmapAnnotation", "title": "Assign the Size to the HeatmapAnnotation Object", "topics": [ "size<-.HeatmapAnnotation", "sizeAssign.HeatmapAnnotation" ] }, { "page": "sizeAssign.SingleAnnotation", "title": "Assign the Size to the SingleAnnotation Object", "topics": [ "size<-.SingleAnnotation", "sizeAssign.SingleAnnotation" ] }, { "page": "smartAlign2", "title": "Adjust positions of rectanglar shapes", "topics": [ "smartAlign2" ] }, { "page": "str.comb_mat", "title": "str method", "topics": [ "str.comb_mat" ] }, { "page": "subset_gp", "title": "Subset a gpar Object", "topics": [ "subset_gp" ] }, { "page": "subset_matrix_by_row", "title": "Subset the Matrix by Rows", "topics": [ "subset_matrix_by_row" ] }, { "page": "subset_no", "title": "Do not do subseting", "topics": [ "subset_no" ] }, { "page": "subset_vector", "title": "Subset the vector", "topics": [ "subset_vector" ] }, { "page": "summary.Heatmap", "title": "Print the Summary of a Heatmap", "topics": [ "summary.Heatmap" ] }, { "page": "summary.HeatmapList", "title": "Summary of a Heatmap List", "topics": [ "summary.HeatmapList" ] }, { "page": "t.comb_mat", "title": "Transpost the Combination Matrix", "topics": [ "t.comb_mat" ] }, { "page": "test_alter_fun", "title": "Test alter_fun for oncoPrint()", "topics": [ "test_alter_fun" ] }, { "page": "textbox_grob", "title": "A simple grob for the word cloud", "topics": [ "textbox_grob" ] }, { "page": "unify_mat_list", "title": "Unify a List of Matrix", "topics": [ "unify_mat_list" ] }, { "page": "UpSet", "title": "Make the UpSet plot", "topics": [ "UpSet" ] }, { "page": "upset_left_annotation", "title": "UpSet Left Annotation", "topics": [ "upset_left_annotation" ] }, { "page": "upset_right_annotation", "title": "Default UpSet Right Annotation", "topics": [ "upset_right_annotation" ] }, { "page": "upset_top_annotation", "title": "Default UpSet Top Annotation", "topics": [ "upset_top_annotation" ] }, { "page": "width.AnnotationFunction", "title": "Width of the AnnotationFunction Object", "topics": [ "width.AnnotationFunction" ] }, { "page": "width.Heatmap", "title": "Width of the Heatmap", "topics": [ "width.Heatmap" ] }, { "page": "width.HeatmapAnnotation", "title": "Width of the HeatmapAnnotation Object", "topics": [ "width.HeatmapAnnotation" ] }, { "page": "width.HeatmapList", "title": "Width of the Heatmap List", "topics": [ "width.HeatmapList" ] }, { "page": "width.Legends", "title": "Width of the Legends", "topics": [ "width.Legends" ] }, { "page": "width.SingleAnnotation", "title": "Width of the SingleAnnotation Object", "topics": [ "width.SingleAnnotation" ] }, { "page": "widthAssign.AnnotationFunction", "title": "Assign the Width to the AnnotationFunction Object", "topics": [ "width<-.AnnotationFunction", "widthAssign.AnnotationFunction" ] }, { "page": "widthAssign.HeatmapAnnotation", "title": "Assign the Width to the HeatmapAnnotation Object", "topics": [ "width<-.HeatmapAnnotation", "widthAssign.HeatmapAnnotation" ] }, { "page": "widthAssign.SingleAnnotation", "title": "Assign the Width to the SingleAnnotation Object", "topics": [ "width<-.SingleAnnotation", "widthAssign.SingleAnnotation" ] }, { "page": "widthDetails.annotation_axis", "title": "Width for annotation_axis Grob", "topics": [ "widthDetails.annotation_axis" ] }, { "page": "widthDetails.legend", "title": "Grob width for packed_legends", "topics": [ "widthDetails.legend" ] }, { "page": "widthDetails.legend_body", "title": "Grob width for legend_body", "topics": [ "widthDetails.legend_body" ] }, { "page": "widthDetails.packed_legends", "title": "Grob width for packed_legends", "topics": [ "widthDetails.packed_legends" ] }, { "page": "widthDetails.textbox", "title": "Width for textbox grob", "topics": [ "widthDetails.textbox" ] } ], "_readme": "https://github.com/bioc/ComplexHeatmap/raw/HEAD/README.md", "_rundeps": [ "BiocGenerics", "circlize", "clue", "cluster", "codetools", "colorspace", "crayon", "digest", "doParallel", "foreach", "generics", "GetoptLong", "GlobalOptions", "IRanges", "iterators", "matrixStats", "png", "RColorBrewer", "rjson", "S4Vectors", "shape" ], "_vignettes": [ { "source": "complex_heatmap.rmd", "filename": "complex_heatmap.html", "title": "ComplexHeatmap vignette", "engine": "knitr", "headings": [], "created": "2018-10-23 19:59:12", "modified": "2021-02-12 19:42:01", "commits": 4 }, { "source": "most_probably_asked_questions.Rmd", "filename": "most_probably_asked_questions.html", "title": "Most probably asked questions", "engine": "knitr", "headings": [ "Most probably asked questions", "There is no plot coming out after running Heatmap() function.", "Retrieve orders and dendrograms.", "How should I control the height or width of the heatmap annotations?", "How should I control the axes of the annotations?", "How to control the style of legends?", "Some text are cut by the plotting region.", "Can the heatmaps be added vertically?", "Does Heatmap title supports mathematical expression?", "I have many heatmaps and I want to put them into different panels for a big figure for my paper.", "I have a matrix with too many rows and I want to simplify the row dendrogram.", "I have a matrix with huge nunmber of rows or columns, what is the efficient way to visualize it?", "How to add axes for dendrograms?", "I set row_km/column_km and it gives me different k-means clusterings for different runs.", "I only want to draw dendrograms plus a list of annotations.", "I still have a problem with the package and I am lost in the ocean of the huge vignette.", "Can I also add heatmaps produced by pheatmap()?", "Can I make an interactive heatmap?" ], "created": "2018-10-30 08:58:14", "modified": "2021-02-09 20:31:08", "commits": 19 } ], "_score": 17.614713074929423, "_indexed": true, "_nocasepkg": "complexheatmap", "_universes": [ "bioc", "jokergoo" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "2.29.0", "date": "2026-05-30T08:51:20.000Z", "distro": "noble", "commit": "d6cf9276a7a5703e5253ee4f70e8b6d64aa15762", "fileid": "c76f8f31a9fe2e317cb37eb60bc44c7faf7b775596d99f586193560c30fff2c4", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679542231" }, { "r": "4.6.0", "os": "linux", "version": "2.29.0", "date": "2026-05-30T08:51:34.000Z", "distro": "noble", "commit": "d6cf9276a7a5703e5253ee4f70e8b6d64aa15762", "fileid": "8f09b03d7692eca528165bbea05f24d7b27970632d269c4072b14c127bbae537", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679542231" }, { "r": "4.5.3", "os": "mac", "version": "2.29.0", "date": "2026-05-30T12:17:12.000Z", "commit": "d6cf9276a7a5703e5253ee4f70e8b6d64aa15762", "fileid": "2c81e733509e861f7e0856d3418dfc4bae820c3d22a800a217447a6fa627a8f1", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679542231" }, { "r": "4.6.0", "os": "mac", "version": "2.29.0", "date": "2026-05-30T12:17:34.000Z", "commit": "d6cf9276a7a5703e5253ee4f70e8b6d64aa15762", "fileid": "1d1281bd90e2f569edbb0eaa419b23f2347b5d447699077346cc806a54ff8bb6", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679542231" }, { "r": "4.6.0", "os": "wasm", "version": "2.29.0", "date": "2026-05-30T08:50:35.000Z", "commit": "d6cf9276a7a5703e5253ee4f70e8b6d64aa15762", "fileid": "afcf0ea6c8d5d07b8cfe901f60ac884b40c4c38a50661d59d4203e39c4832103", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679542231" }, { "r": "4.7.0", "os": "win", "version": "2.29.0", "date": "2026-05-30T08:49:39.000Z", "commit": "d6cf9276a7a5703e5253ee4f70e8b6d64aa15762", "fileid": "cb18da5874d891e5f650f4d9775b47b1daec7361eecce6b08963a50e40eb1270", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679542231" }, { "r": "4.5.3", "os": "win", "version": "2.29.0", "date": "2026-05-30T08:49:28.000Z", "commit": "d6cf9276a7a5703e5253ee4f70e8b6d64aa15762", "fileid": "aa843ce551d7f262d65837221ddc61d7a8fe038e97c2595d216d0f61c4fa2798", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679542231" }, { "r": "4.6.0", "os": "win", "version": "2.29.0", "date": "2026-05-30T08:49:45.000Z", "commit": "d6cf9276a7a5703e5253ee4f70e8b6d64aa15762", "fileid": "b2bd7a526cf2f22c3f1a9bb50ae89d2a3ea3596cfd86d70ea726b505fb7b2977", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679542231" } ] }