{ "_id": "6aca1887fe5cc25786e84a3b", "Package": "CoSIAdata", "Title": "VST normalized RNA-Sequencing data with annotations for multiple\nspecies samples from Bgee", "Description": "Variance Stabilized Transformation of Read Counts derived\nfrom Bgee RNA-Seq Expression Data. Expression Data includes\nannotations and is across 6 species (Homo sapiens, Mus\nmusculus, Rattus norvegicus, Danio rerio, Drosophila\nmelanogaster, and Caenorhabditis elegans) and across more than\n132 tissues. The data is represented as a RData files and is\navailable in ExperimentHub.", "Version": "1.13.0", "Authors@R": "c(person(given = \"Anisha\",\nfamily = \"Haldar\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0002-1395-9793\")),\nperson(given = c(\"Vishal\", \"H.\"),\nfamily = \"Oza\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0001-6990-0267\")),\nperson(given = c(\"Amanda\", \"D.\"),\nfamily = \"Clark\",\nrole = c(\"cre\",\"aut\"),\nemail = \"clarkaduab@gmail.com\",\ncomment = c(ORCID = \"0000-0002-1186-3114\")),\nperson(given = c(\"Nathaniel\", \"S.\"),\nfamily = \"DeVoss\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0003-0465-2770\")),\nperson(given = c(\"Brittany\", \"N.\"),\nfamily = \"Lasseigne\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0002-1642-8904\")))", "biocViews": "ExperimentHub, RNASeqData, ExperimentData, PackageTypeData,\nOrganismData, Tissue,Caenorhabditis_elegans_Data,\nDanio_rerio_Data, Drosophila_melanogaster_Data,\nHomo_sapiens_Data, Mus_musculus_Data, Rattus_norvegicus_Data,\nSequencingData, ExpressionData", "Encoding": "UTF-8", "License": "MIT + file LICENSE", "BugReports": "https://github.com/lasseignelab/CoSIAdata/issues", "VignetteBuilder": "knitr", "NeedsCompilation": "no", "RoxygenNote": "7.3.3", "Config/pak/sysreqs": "libicu-dev libpng-dev libssl-dev zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:37:42 UTC", "RemoteUrl": "https://github.com/bioc/CoSIAdata", "RemoteRef": "HEAD", "RemoteSha": "711910785c35bce5cffa8528829675ee6699a570", "Packaged": { "Date": "2026-10-10 10:44:51 UTC", "User": "root" }, "Author": "Anisha Haldar [aut] (ORCID: ),\nVishal H. Oza [aut] (ORCID: ),\nAmanda D. Clark [cre, aut] (ORCID:\n),\nNathaniel S. DeVoss [aut] (ORCID:\n),\nBrittany N. Lasseigne [aut] (ORCID:\n)", "Maintainer": "Amanda D. Clark ", "_user": "bioc", "_type": "src", "_file": "CoSIAdata_1.13.0.tar.gz", "_fileid": "https://r2.ropensci.org/bd6dbb7c5e5577e8e1811c99fd66964b7ae8be07a2cb810ef662670bf0015977", "_filesize": 85442, "_sha256": "bd6dbb7c5e5577e8e1811c99fd66964b7ae8be07a2cb810ef662670bf0015977", "_expires": "2027-01-18T10:50:46.000Z", "_created": "2026-10-10T10:44:51.000Z", "_published": "2026-10-10T10:50:47.745Z", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/38045790646", "_status": "success", "_host": "GitHub-Actions", "_bioccheck": { "error": 0, "warning": 0, "note": 4 }, "_upstream": "https://github.com/bioc/CoSIAdata", "_commit": { "id": "711910785c35bce5cffa8528829675ee6699a570", "author": "lshep ", "committer": "lshep ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777379862 }, "_maintainer": { "name": "Amanda D. Clark", "email": "clarkaduab@gmail.com", "orcid": "0000-0002-1186-3114" }, "_distro": "resolute", "_jobs": [ { "job": 114195549452, "time": 178, "config": "bioc-checks", "r": "4.6.1", "check": "NOTE", "artifact": "11667484525" }, { "job": 114195549436, "time": 296, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "11666988735" }, { "job": 114195549479, "time": 312, "config": "linux-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "11667614462" }, { "job": 114194989490, "time": 194, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11667189465" } ], "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.3.0", "role": "Depends" }, { "package": "ExperimentHub", "version": ">= 2.6.0", "role": "Depends" }, { "package": "BiocStyle", "version": ">= 2.26.0", "role": "Suggests" }, { "package": "utils", "version": ">= 4.3.0", "role": "Suggests" }, { "package": "AnnotationHub", "version": ">= 3.7.3", "role": "Suggests" }, { "package": "knitr", "version": ">= 1.42", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 3 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.13.0", "bioc": "3.24", "repository": "data/experiment" }, { "branch": "release", "version": "1.12.0", "bioc": "3.23", "repository": "data/experiment" } ], "_topics": [ "experimenthub", "rnaseqdata", "experimentdata", "packagetypedata", "organismdata", "tissue", "caenorhabditis_elegans_data", "danio_rerio_data", "drosophila_melanogaster_data", "homo_sapiens_data", "mus_musculus_data", "rattus_norvegicus_data", "sequencingdata", "expressiondata", "datapkg" ], "_stars": 0, "_contributors": [ { "user": "adc0032", "count": 29, "uuid": 18667790 }, { "user": "anishahaldar", "count": 11, "uuid": 77807004 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 476, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_devurl": "https://github.com/lasseignelab/cosiadata", "_searchresults": 3, "_datapkg": true, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/CoSIAdata.html", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "LICENSE" ], "_cranurl": false, "_exports": [ "Caenorhabditis_elegans", "Danio_rerio", "Drosophila_melanogaster", "Homo_sapiens", "Mus_musculus", "Rattus_norvegicus" ], "_help": [ { "page": "dot-onLoad", "title": ".onLoad Function for Resource Name", "topics": [ ".onLoad", "Caenorhabditis_elegans", "Danio_rerio", "Drosophila_melanogaster", "Homo_sapiens", "Mus_musculus", "Rattus_norvegicus" ] } ], "_readme": "https://github.com/bioc/CoSIAdata/raw/HEAD/README.md", "_rundeps": [ "AnnotationDbi", "AnnotationHub", "askpass", "Biobase", "BiocBaseUtils", "BiocFileCache", "BiocGenerics", "BiocManager", "BiocVersion", "Biostrings", "bit", "bit64", "blob", "cachem", "cli", "cpp11", "crayon", "curl", "DBI", "dbplyr", "dplyr", "ExperimentHub", "fastmap", "filelock", "generics", "glue", "httr", "httr2", "IRanges", "jsonlite", "KEGGREST", "lifecycle", "magrittr", "memoise", "mime", "openssl", "pillar", "pkgconfig", "png", "purrr", "R6", "rappdirs", "rlang", "RSQLite", "S4Vectors", "Seqinfo", "stringi", "stringr", "sys", "tibble", "tidyr", "tidyselect", "utf8", "vctrs", "withr", "XVector", "yaml" ], "_vignettes": [ { "source": "CoSIAdata_vignette.Rmd", "filename": "CoSIAdata_vignette.html", "title": "CoSIAdata, an Experimental Hub Package of VST Stabilized RNA-Seq Data that accompanies the CoSIA Package", "author": "Anisha Haldar, Vishal H. Oza, Amanda D. Clark, Nathaniel S. DeVoss, Brittany N. Lasseigne", "engine": "knitr::rmarkdown", "headings": [ "CoSIAdata Introduction", "Using CoSIAdata", "Behind the Scenes of CoSIAdata", "Accessing CoSIAdata Metadata" ], "created": "2023-01-13 17:30:44", "modified": "2023-04-11 18:28:15", "commits": 13 } ], "_score": 4, "_indexed": true, "_nocasepkg": "cosiadata", "_universes": [ "bioc", "lasseignelab" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.13.0", "date": "2026-10-10T10:48:40.000Z", "distro": "resolute", "commit": "711910785c35bce5cffa8528829675ee6699a570", "fileid": "https://r2.ropensci.org/02f98166fa976d1fc7426fc8c94f882c890a13ae2e5f3ade2e5376a430e7f21a", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38045790646" }, { "r": "4.6.1", "os": "linux", "version": "1.13.0", "date": "2026-10-10T10:48:33.000Z", "distro": "resolute", "commit": "711910785c35bce5cffa8528829675ee6699a570", "fileid": "https://r2.ropensci.org/0a57b04b3850a536db4cbc2c6804cd7bf34153f12ccae21bf84d5a1c63997bb8", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38045790646" } ] }