{ "_id": "6a1adab61d7bb097a09e88a2", "Package": "ClusterSignificance", "Title": "The ClusterSignificance package provides tools to assess if\nclass clusters in dimensionality reduced data representations\nhave a separation different from permuted data", "Version": "1.41.0", "Authors@R": "c(\nperson(\"Jason T.\", \"Serviss\", email = \"Jason.serviss@ki.se\", role = c(\"aut\", \"cre\"), comment = c(ORCID = 0000-0002-5778-7014)),\nperson(\"Jesper R.\", \"Gadin\", email = \"Jesper.gadin@ki.se\", role = c(\"aut\"))\n)", "Author": "Jason T. Serviss [aut, cre], Jesper R. Gadin [aut]", "Maintainer": "Jason T Serviss ", "Description": "The ClusterSignificance package provides tools to assess\nif class clusters in dimensionality reduced data\nrepresentations have a separation different from permuted data.\nThe term class clusters here refers to, clusters of points\nrepresenting known classes in the data. This is particularly\nuseful to determine if a subset of the variables, e.g. genes in\na specific pathway, alone can separate samples into these\nestablished classes. ClusterSignificance accomplishes this by,\nprojecting all points onto a one dimensional line. Cluster\nseparations are then scored and the probability of the seen\nseparation being due to chance is evaluated using a permutation\nmethod.", "URL": "https://github.com/jasonserviss/ClusterSignificance/", "BugReports": "https://github.com/jasonserviss/ClusterSignificance/issues", "License": "GPL-3", "LazyData": "true", "VignetteBuilder": "knitr", "biocViews": "Clustering, Classification, PrincipalComponent,\nStatisticalMethod", "NeedsCompilation": "no", "Collate": "'ClusterSignificance-package.R' 'All-classes.R'\n'classifier-methods.R' 'initialize-methods.R' 'mlpMatrix.R'\n'pcpMatrix.R' 'permutation-methods.R' 'plot-methods.R'\n'projection-methods.R' 'show-methods.R'", "RoxygenNote": "6.0.1", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:43:24 UTC", "RemoteUrl": "https://github.com/bioc/ClusterSignificance", "RemoteRef": "HEAD", "RemoteSha": "1a070969009d6429db96debd591d5f6f6ea249e3", "Packaged": { "Date": "2026-05-30 08:55:20 UTC", "User": "root" 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