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  "Title": "Chip Analysis Methylation Pipeline for Illumina\nHumanMethylation450 and EPIC",
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  "Date": "2020-11-2",
  "Description": "The package includes quality control metrics, a selection\nof normalization methods and novel methods to identify\ndifferentially methylated regions and to highlight copy number\nalterations.",
  "Authors@R": "c(person(\"Tian\",\"Yuan\", role = c(\"cre\", \"aut\"),\nemail = \"champ450k@gmail.com\"),\nperson(\"Tiffany\",\"Morris\",role = \"ctb\"),\nperson(\"Lee\", \"Stirling\", role = \"ctb\"),\nperson(\"Andrew\", \"Feber\", role = \"ctb\"),\nperson(\"Andrew\", \"Teschendorff\", role = \"ctb\"),\nperson(\"Ankur\", \"Chakravarthy\", role = \"ctb\"))",
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  "Author": "Yuan Tian [cre,aut], Tiffany Morris [ctb], Lee Stirling [ctb],\nAndrew Feber [ctb], Andrew Teschendorff [ctb], Ankur\nChakravarthy [ctb]",
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      "title": "The Chip Analysis Methylation Pipeline",
      "author": "Yuan Tian, Tiffany J Morris, Amy P Webster, Zhen Yang, Stephan Beck, Andrew Feber, and Andrew E Teschendorff ",
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        "Introduction",
        "Installation",
        "Test Data",
        "ChAMP Pipeline",
        "Pipeline Introduction",
        "Full Pipeline",
        "Separated Steps",
        "EPIC pipeline",
        "Computational Requirements",
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        "DMP.GUI performance on numeric variable",
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        "Differential Methylation Regions",
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        "Copy Number Variation",
        "Cell Type Heterogeneity",
        "Summary",
        "Citing ChAMP",
        "References"
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      "created": "2016-10-01 18:12:34",
      "modified": "2025-09-23 13:19:29",
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