{
  "_id": "6a212a6ecd65a98ecbd229d5",
  "Package": "CellMapper",
  "Type": "Package",
  "Title": "Predict genes expressed selectively in specific cell types",
  "Version": "1.39.0",
  "Date": "2016-10-05",
  "Author": "Brad Nelms",
  "Maintainer": "Brad Nelms <bnelms.research@gmail.com>",
  "Description": "Infers cell type-specific expression based on\nco-expression similarity with known cell type marker genes. Can\nmake accurate predictions using publicly available expression\ndata, even when a cell type has not been isolated before.",
  "License": "Artistic-2.0",
  "biocViews": "Microarray, Software, GeneExpression",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:44:00 UTC",
  "RemoteUrl": "https://github.com/bioc/CellMapper",
  "RemoteRef": "HEAD",
  "RemoteSha": "3827636d6d988da152743265e4803937842e00bf",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-04 07:15:25 UTC",
    "User": "root"
  },
  "MD5sum": "380f1e807ab0dac76e81ed32e7283031",
  "_user": "bioc",
  "_type": "src",
  "_file": "CellMapper_1.39.0.tar.gz",
  "_fileid": "5bf121a3729e654a7c8f9ef34a448be3df0ab2aad98aab6a113572075b7a82a6",
  "_filesize": 315946,
  "_sha256": "5bf121a3729e654a7c8f9ef34a448be3df0ab2aad98aab6a113572075b7a82a6",
  "_created": "2026-06-04T07:15:25.000Z",
  "_published": "2026-06-04T07:34:06.845Z",
  "_jobs": [
    {
      "job": 79468702680,
      "time": 159,
      "config": "bioc-checks",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7405323452"
    },
    {
      "job": 79468702623,
      "time": 604,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7405444629"
    },
    {
      "job": 79468702655,
      "time": 261,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7405350986"
    },
    {
      "job": 79468702586,
      "time": 651,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7405483339"
    },
    {
      "job": 79468702589,
      "time": 193,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7405361217"
    },
    {
      "job": 79467988568,
      "time": 311,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7405279965"
    },
    {
      "job": 79468702636,
      "time": 127,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7405314859"
    },
    {
      "job": 79468702643,
      "time": 846,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7405512808"
    },
    {
      "job": 79468702667,
      "time": 195,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7405332809"
    },
    {
      "job": 79468702679,
      "time": 1088,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7405582856"
    }
  ],
  "_bioccheck": {
    "error": 1,
    "warning": 3,
    "note": 15
  },
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26936660312",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/bioc/CellMapper",
  "_commit": {
    "id": "3827636d6d988da152743265e4803937842e00bf",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777380240
  },
  "_maintainer": {
    "name": "Brad Nelms",
    "email": "bnelms.research@gmail.com",
    "login": "bradnelms",
    "description": "",
    "uuid": 20913743
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "S4Vectors",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Depends"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "CellMapperData",
      "role": "Suggests"
    },
    {
      "package": "Biobase",
      "role": "Suggests"
    },
    {
      "package": "HumanAffyData",
      "role": "Suggests"
    },
    {
      "package": "ALL",
      "role": "Suggests"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    },
    {
      "package": "ExperimentHub",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.39.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.38.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "microarray",
    "software",
    "geneexpression"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 361,
    "source": "https://www.bioconductor.org/packages/stats/bioc/CellMapper"
  },
  "_mentions": 3,
  "_searchresults": 19,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/CellMapper.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "CellMapperList",
    "CMprep",
    "CMsearch",
    "ReplicateManuscript",
    "show"
  ],
  "_datasets": [
    {
      "name": "ExampleQueryGenes",
      "title": "Example Gene Lists",
      "object": "ExampleQueryGenes",
      "file": "ExampleQueryGenes.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "CellType",
        "GeneName",
        "EntrezID",
        "Dataset"
      ],
      "rows": 30,
      "table": true,
      "tojson": true
    },
    {
      "name": "NegativeControlGenes",
      "title": "Example Gene Lists",
      "object": "NegativeControlGenes",
      "file": "NegativeControlGenes.rda",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "PositiveControlGenes",
      "title": "Example Gene Lists",
      "object": "PositiveControlGenes",
      "file": "PositiveControlGenes.rda",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "CellMapperList-class",
      "title": "Class to contain expression data pre-processed for the 'CellMapper' package. The 'CellMapperList' class extends the 'SimpleList' class.",
      "topics": [
        "CellMapperList",
        "CellMapperList-class",
        "show,CellMapperList-method"
      ]
    },
    {
      "page": "CMprep",
      "title": "Pre-process a gene expression dataset for CellMapper",
      "topics": [
        "CMprep"
      ]
    },
    {
      "page": "CMsearch",
      "title": "Predict cell type-expressed genes using CellMapper",
      "topics": [
        "CellMapper",
        "CMsearch"
      ]
    },
    {
      "page": "ExampleGeneLists",
      "title": "Example Gene Lists",
      "topics": [
        "ExampleGeneLists",
        "ExampleQueryGenes",
        "NegativeControlGenes",
        "PositiveControlGenes"
      ]
    },
    {
      "page": "ReplicateManuscript",
      "title": "Replicate Results from CellMapper Manuscript",
      "topics": [
        "ReplicateManuscript"
      ]
    }
  ],
  "_rundeps": [
    "BiocGenerics",
    "generics",
    "S4Vectors"
  ],
  "_vignettes": [
    {
      "source": "CellMapper.Rnw",
      "filename": "CellMapper.pdf",
      "title": "CellMapper Vignette",
      "engine": "utils::Sweave",
      "headings": [],
      "created": "2016-07-22 21:01:40",
      "modified": "2018-08-29 19:34:04",
      "commits": 3
    }
  ],
  "_score": 4.056904851336473,
  "_indexed": true,
  "_nocasepkg": "cellmapper",
  "_universes": [
    "bioc",
    "bradnelms"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.39.0",
      "date": "2026-06-04T07:18:12.000Z",
      "distro": "noble",
      "commit": "3827636d6d988da152743265e4803937842e00bf",
      "fileid": "d0751c8c4d0fe0b474441efb40d015575e1e4416e2226728c469d782ac001d18",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26936660312"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.39.0",
      "date": "2026-06-04T07:18:12.000Z",
      "distro": "noble",
      "commit": "3827636d6d988da152743265e4803937842e00bf",
      "fileid": "84c0a671fbd3dce672dc48b133190e097b36255a7dfb2edb5b7abefd144dd622",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26936660312"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.39.0",
      "date": "2026-06-04T07:18:54.000Z",
      "commit": "3827636d6d988da152743265e4803937842e00bf",
      "fileid": "83bbc0c8f8e3bb1c4c8bb093227cb9e607f1e8e0d5e6a243e39825d5705e6490",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26936660312"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.39.0",
      "date": "2026-06-04T07:18:59.000Z",
      "commit": "3827636d6d988da152743265e4803937842e00bf",
      "fileid": "4cc4e50ea96ee170b4f2b90c1ad9ade34aba94792a8c11745e01feec55eecd8e",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26936660312"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.39.0",
      "date": "2026-06-04T07:17:49.000Z",
      "commit": "3827636d6d988da152743265e4803937842e00bf",
      "fileid": "3aa2d94765ac8b87a28bc17b8a8e01e860b3d451b21c11db607cb428e95dc39b",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26936660312"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.39.0",
      "date": "2026-06-04T07:17:12.000Z",
      "commit": "3827636d6d988da152743265e4803937842e00bf",
      "fileid": "0940c26f58d1c4ec525a1e959ef22cc5231f7e41904ae4f82ad591655af5d72e",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26936660312"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.39.0",
      "date": "2026-06-04T07:16:59.000Z",
      "commit": "3827636d6d988da152743265e4803937842e00bf",
      "fileid": "9be1557b62f9547fd2b81cd520df9714bb1e09c40f4ca68aa0aac93f4ba41653",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26936660312"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.39.0",
      "date": "2026-06-04T07:17:10.000Z",
      "commit": "3827636d6d988da152743265e4803937842e00bf",
      "fileid": "593d9b4d7af02871085d2c32b1b7963d5c0e338beda9521c33e24bcbe4c86376",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26936660312"
    }
  ]
}