{ "_id": "6a4a669b1e9cffeb4b8339ba", "Package": "CellBarcode", "Type": "Package", "Title": "Cellular DNA Barcode Analysis toolkit", "Version": "1.19.0", "Authors@R": "c(\nperson(\"Wenjie\", \"Sun\", email = \"sunwjie@gmail.com\", role = c(\"cre\", \"aut\"), comment=c(ORCID=\"0000-0002-3100-2346\")),\nperson(\"Anne-Marie\", \"Lyne\", email = \"Anne-Marie.Lyne@curie.fr\", role = \"aut\"),\nperson(\"Leila\", \"Perie\", email = \"leila.perie@curie.fr\", role = \"aut\")\n)", "Description": "The package CellBarcode performs Cellular DNA Barcode\nanalysis. It can handle all kinds of DNA barcodes, as long as\nthe barcode is within a single sequencing read and has a\npattern that can be matched by a regular expression.\n\\code{CellBarcode} can handle barcodes with flexible lengths,\nwith or without UMI (unique molecular identifier). This tool\nalso can be used for pre-processing some amplicon data such as\nCRISPR gRNA screening, immune repertoire sequencing, and\nmetagenome data.", "License": "Artistic-2.0", "Encoding": "UTF-8", "RoxygenNote": "7.3.2", "biocViews": "Preprocessing, QualityControl, Sequencing, CRISPR", "Config/testthat/edition": "3", "VignetteBuilder": "knitr", "NeedsCompilation": "yes", "URL": "https://wenjie1991.github.io/CellBarcode/", "BugReports": "https://github.com/wenjie1991/CellBarcode/issues", "Config/pak/sysreqs": "libbz2-dev libicu-dev libjpeg-dev liblzma-dev\nlibpng-dev xz-utils zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:57:27 UTC", "RemoteUrl": "https://github.com/bioc/CellBarcode", "RemoteRef": "HEAD", "RemoteSha": "20a396a3373b3c0372c317d6699e771d4515994d", "Packaged": { "Date": "2026-07-05 14:00:20 UTC", "User": "root" }, "Author": "Wenjie Sun [cre, aut] (ORCID: ),\nAnne-Marie Lyne [aut],\nLeila Perie [aut]", "Maintainer": "Wenjie Sun ", "_user": "bioc", "_type": "src", "_file": "CellBarcode_1.19.0.tar.gz", "_fileid": "https://r2.ropensci.org/e91232456e80938c775136e4e7f0dc9d1e119693351545b54eaa39422486f593", "_filesize": 2979605, "_sha256": "e91232456e80938c775136e4e7f0dc9d1e119693351545b54eaa39422486f593", "_expires": "2026-10-13T14:13:45.000Z", "_created": "2026-07-05T14:00:20.000Z", "_published": "2026-07-05T14:13:47.765Z", "_bioccheck": { "error": 0, "warning": 0, "note": 12 }, "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/28743115042", "_status": "success", "_upstream": "https://github.com/bioc/CellBarcode", "_commit": { "id": "20a396a3373b3c0372c317d6699e771d4515994d", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777381047 }, "_maintainer": { "name": "Wenjie Sun", "email": "sunwjie@gmail.com", "login": "wenjie1991", "description": "Passion about {How} and {Why} using 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"bc_extract_sc_fastq" ] }, { "page": "bc_extract_sc_sam", "title": "Extract barcode from single-cell sequencing sam file", "topics": [ "bc_extract_sc_bam", "bc_extract_sc_sam" ] }, { "page": "bc_messyBc", "title": "Accesses messyBc slot in the BarcodeObj object", "topics": [ "bc_messyBc", "bc_messyBc,BarcodeObj-method" ] }, { "page": "bc_meta", "title": "Accesses and sets metadata in BarcodeObj object", "topics": [ "bc_meta", "bc_meta,BarcodeObj-method", "bc_meta<-", "bc_meta<-,BarcodeObj-method" ] }, { "page": "bc_names", "title": "Access & update sample names in BarcodeObj & and BarcodeQcSet", "topics": [ "bc_names", "bc_names,BarcodeObj-method", "bc_names,BarcodeQcSet-method", "bc_names<-", "bc_names<-,BarcodeObj,character-method", "bc_names<-,BarcodeQcSet,ANY-method" ] }, { "page": "bc_obj", "title": "A dummy BarcodeObj object", "topics": [ "bc_obj" ] }, { "page": "bc_plot_count", "title": "Plot for counts distribution", "topics": [ "bc_plot_count", 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