{
  "_id": "6a1ad4f61d7bb097a09e462b",
  "Package": "CTDquerier",
  "Title": "Package for CTDbase data query, visualization and downstream\nanalysis",
  "Version": "2.21.0",
  "Authors@R": "c( person(\"Carles\", \"Hernandez-Ferrer\", email = \"carles.hernandez@isglobal.org\", role = c(\"aut\")),\nperson(\"Juan R.\", \"Gonzalez\", email = \"juanr.gonzalez@isglobal.org\", role = \"aut\"),\nperson(\"Xavier\", \"Escribà-Montagut\", email = \"xavier.escriba@isglobal.org\", role = \"cre\"))",
  "Description": "Package to retrieve and visualize data from the\nComparative Toxicogenomics Database (http://ctdbase.org/). The\ndownloaded data is formated as DataFrames for further\ndownstream analyses.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "LazyData": "false",
  "VignetteBuilder": "rmarkdown",
  "RoxygenNote": "7.2.1",
  "biocViews": "Software, BiomedicalInformatics, Infrastructure, DataImport,\nDataRepresentation, GeneSetEnrichment, NetworkEnrichment,\nPathways, Network, GO, KEGG",
  "Config/pak/sysreqs": "libglpk-dev make libicu-dev libxml2-dev libssl-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:55:13 UTC",
  "RemoteUrl": "https://github.com/bioc/CTDquerier",
  "RemoteRef": "HEAD",
  "RemoteSha": "d17aadfd1f2d5bc75cc60a1bb36c6cd390c80b15",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-30 08:44:01 UTC",
    "User": "root"
  },
  "Author": "Carles Hernandez-Ferrer [aut],\nJuan R. Gonzalez [aut],\nXavier Escribà-Montagut [cre]",
  "Maintainer": "Xavier Escribà-Montagut <xavier.escriba@isglobal.org>",
  "MD5sum": "a6fb2ead20f6848df26794991667fbc9",
  "_user": "bioc",
  "_type": "src",
  "_file": "CTDquerier_2.21.0.tar.gz",
  "_fileid": "e7d710886c741d8382be4f56069c0734ae5f458c04ee52ef34176bec8be1ab2f",
  "_filesize": 3070314,
  "_sha256": "e7d710886c741d8382be4f56069c0734ae5f458c04ee52ef34176bec8be1ab2f",
  "_created": "2026-05-30T08:44:01.000Z",
  "_published": "2026-05-30T12:15:50.028Z",
  "_jobs": [
    {
      "job": 78637374580,
      "time": 155,
      "config": "bioc-checks",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7306933867"
    },
    {
      "job": 78637374590,
      "time": 216,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7306939699"
    },
    {
      "job": 78637374589,
      "time": 258,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7306943377"
    },
    {
      "job": 78637374591,
      "time": 162,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7308094909"
    },
    {
      "job": 78637374588,
      "time": 132,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7308092386"
    },
    {
      "job": 78637196259,
      "time": 201,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7306918737"
    },
    {
      "job": 78637374592,
      "time": 111,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7306929594"
    },
    {
      "job": 78637374614,
      "time": 535,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7306971776"
    },
    {
      "job": 78637374627,
      "time": 504,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7306968634"
    },
    {
      "job": 78637374626,
      "time": 137,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7306932172"
    }
  ],
  "_bioccheck": {
    "error": 2,
    "warning": 0,
    "note": 14
  },
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26679475345",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/bioc/CTDquerier",
  "_commit": {
    "id": "d17aadfd1f2d5bc75cc60a1bb36c6cd390c80b15",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777380913
  },
  "_maintainer": {
    "name": "Xavier Escribà-Montagut",
    "email": "xavier.escriba@isglobal.org"
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1",
      "role": "Depends"
    },
    {
      "package": "RCurl",
      "role": "Imports"
    },
    {
      "package": "stringr",
      "role": "Imports"
    },
    {
      "package": "S4Vectors",
      "role": "Imports"
    },
    {
      "package": "stringdist",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "igraph",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "grid",
      "role": "Imports"
    },
    {
      "package": "gridExtra",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "BiocFileCache",
      "role": "Imports"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "2.21.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "2.20.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "software",
    "biomedicalinformatics",
    "infrastructure",
    "dataimport",
    "datarepresentation",
    "genesetenrichment",
    "networkenrichment",
    "pathways",
    "network",
    "go",
    "kegg"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 379,
    "source": "https://www.bioconductor.org/packages/stats/bioc/CTDquerier"
  },
  "_searchresults": 6,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/CTDquerier.html",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "download_ctd_chem",
    "download_ctd_dise",
    "download_ctd_genes",
    "enrich",
    "get_table",
    "get_terms",
    "leaf_plot",
    "load_ctd_chem",
    "load_ctd_dise",
    "load_ctd_gene",
    "plot",
    "query_ctd_chem",
    "query_ctd_dise",
    "query_ctd_gene"
  ],
  "_datasets": [
    {
      "name": "gala",
      "title": "'CTDdata' for ilustrative purpouses",
      "object": "gala",
      "file": "gala.rda",
      "class": [
        "CTDdata"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "CTDdata-class",
      "title": "Class CTDdata",
      "topics": [
        "CTDdata",
        "CTDdata-class",
        "enrich,CTDdata-method",
        "get_table,CTDdata-method",
        "get_terms,CTDdata-method",
        "plot,CTDdata,ANY-method"
      ]
    },
    {
      "page": "CTDquerier",
      "title": "Package for CTDbase data query, data visualization and data analysis.",
      "topics": [
        "CTDquerier"
      ]
    },
    {
      "page": "download_ctd_chem",
      "title": "Function to download checmicals available in CTDbase",
      "topics": [
        "download_ctd_chem"
      ]
    },
    {
      "page": "download_ctd_dise",
      "title": "Function to download diseases available in CTDbase",
      "topics": [
        "download_ctd_dise"
      ]
    },
    {
      "page": "download_ctd_genes",
      "title": "Function to download genes available in CTDbase",
      "topics": [
        "download_ctd_genes"
      ]
    },
    {
      "page": "enrich-methods",
      "title": "Method to perform enrichment analysis using two 'CTDdata' objects",
      "topics": [
        "enrich"
      ]
    },
    {
      "page": "gala",
      "title": "'CTDdata' for ilustrative purpouses",
      "topics": [
        "gala"
      ]
    },
    {
      "page": "get_table-methods",
      "title": "Method to obtain a specific inner table from a 'CTDdata' object.",
      "topics": [
        "get_table"
      ]
    },
    {
      "page": "get_terms-methods",
      "title": "Getter to obtain the terms used to perform a query into CTDbase",
      "topics": [
        "get_terms"
      ]
    },
    {
      "page": "leaf_plot",
      "title": "Function to create a leaf plot",
      "topics": [
        "leaf_plot"
      ]
    },
    {
      "page": "load_ctd_chem",
      "title": "Function to load the '.tsv.gz' file for chemicals",
      "topics": [
        "load_ctd_chem"
      ]
    },
    {
      "page": "load_ctd_dise",
      "title": "Function to load the '.tsv.gz' file for disease",
      "topics": [
        "load_ctd_dise"
      ]
    },
    {
      "page": "load_ctd_gene",
      "title": "Function to load the '.tsv.gz' file for genes",
      "topics": [
        "load_ctd_gene"
      ]
    },
    {
      "page": "query_ctd_chem",
      "title": "Function to query CTDbase using chemical terminology ( Chemical Name )",
      "topics": [
        "query_ctd_chem"
      ]
    },
    {
      "page": "query_ctd_dise",
      "title": "Function to query CTDbase using disease terminology",
      "topics": [
        "query_ctd_dise"
      ]
    },
    {
      "page": "query_ctd_gene",
      "title": "Function to query CTDbase using gene terminology ( Gene Symbol )",
      "topics": [
        "query_ctd_gene"
      ]
    }
  ],
  "_rundeps": [
    "askpass",
    "BiocFileCache",
    "BiocGenerics",
    "bit",
    "bit64",
    "bitops",
    "blob",
    "cachem",
    "cli",
    "cpp11",
    "curl",
    "DBI",
    "dbplyr",
    "dplyr",
    "farver",
    "fastmap",
    "filelock",
    "generics",
    "ggplot2",
    "glue",
    "gridExtra",
    "gtable",
    "httr2",
    "igraph",
    "isoband",
    "labeling",
    "lattice",
    "lifecycle",
    "magrittr",
    "Matrix",
    "memoise",
    "openssl",
    "pillar",
    "pkgconfig",
    "purrr",
    "R6",
    "rappdirs",
    "RColorBrewer",
    "RCurl",
    "rlang",
    "RSQLite",
    "S4Vectors",
    "S7",
    "scales",
    "stringdist",
    "stringi",
    "stringr",
    "sys",
    "tibble",
    "tidyr",
    "tidyselect",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr"
  ],
  "_score": 2.3010299956639813,
  "_indexed": true,
  "_nocasepkg": "ctdquerier",
  "_universes": [
    "bioc"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2.21.0",
      "date": "2026-05-30T08:46:48.000Z",
      "distro": "noble",
      "commit": "d17aadfd1f2d5bc75cc60a1bb36c6cd390c80b15",
      "fileid": "7671e4ba2803d6d7c60a1df8e0662ecff3e1a4b532141f5989b9e5d11c629bb5",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679475345"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "2.21.0",
      "date": "2026-05-30T08:47:23.000Z",
      "distro": "noble",
      "commit": "d17aadfd1f2d5bc75cc60a1bb36c6cd390c80b15",
      "fileid": "d213ec5aaa776057ab3f5624d2c360b7141cb8ffda43e6ea10ae7c2b234b2086",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679475345"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2.21.0",
      "date": "2026-05-30T12:14:21.000Z",
      "commit": "d17aadfd1f2d5bc75cc60a1bb36c6cd390c80b15",
      "fileid": "15e6711d0babd2f428c87176f69f4165e44129189277a74b8e089fe6d3c7357a",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679475345"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "2.21.0",
      "date": "2026-05-30T12:14:02.000Z",
      "commit": "d17aadfd1f2d5bc75cc60a1bb36c6cd390c80b15",
      "fileid": "6b5f5cbc97a4b6923c670fef669dc1a544b2a40e08ef66f04b5d2fb32c5841e4",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679475345"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "2.21.0",
      "date": "2026-05-30T08:46:13.000Z",
      "commit": "d17aadfd1f2d5bc75cc60a1bb36c6cd390c80b15",
      "fileid": "73436144819d07af2547e78c01b06715ced25e8beea74d473cbc1aea31a7503b",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679475345"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "2.21.0",
      "date": "2026-05-30T08:51:40.000Z",
      "commit": "d17aadfd1f2d5bc75cc60a1bb36c6cd390c80b15",
      "fileid": "9a181c984daafe5db8e3410fc062732f3ad54ad69760b0bf56257b70a7221c9e",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679475345"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "2.21.0",
      "date": "2026-05-30T08:51:25.000Z",
      "commit": "d17aadfd1f2d5bc75cc60a1bb36c6cd390c80b15",
      "fileid": "ff824ac467e29c5b07fb4680b37010a06c8e48e4ac71e49c1978efd27c0b8a64",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679475345"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "2.21.0",
      "date": "2026-05-30T08:45:23.000Z",
      "commit": "d17aadfd1f2d5bc75cc60a1bb36c6cd390c80b15",
      "fileid": "73c91293ae6c3285e700a74af0fde916b56f574da134281bf9f55e4ecc7e5016",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679475345"
    }
  ]
}