{ "_id": "6ad209831200a49930211ff0", "Package": "CFAssay", "Type": "Package", "Title": "Statistical analysis for the Colony Formation Assay", "Version": "1.47.0", "Date": "2020-03-27", "Author": "Herbert Braselmann", "Maintainer": "Herbert Braselmann ", "Description": "The package provides functions for calculation of\nlinear-quadratic cell survival curves and for ANOVA of\nexperimental 2-way designs along with the colony formation\nassay.", "License": "LGPL", "biocViews": "CellBasedAssays, CellBiology, ImmunoOncology, Regression,\nSurvival", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:40:10 UTC", "RemoteUrl": "https://github.com/bioc/CFAssay", "RemoteRef": "HEAD", "RemoteSha": "d2d7549e18ead981308fbd170638fdf68f41de52", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-16 11:20:55 UTC", "User": "root" }, "_user": "bioc", "_type": "src", "_file": "CFAssay_1.47.0.tar.gz", "_fileid": "https://r2.ropensci.org/7d4e6d9d9e209c3125d15a9a20b2591248426d3ce7dcec26193d2242dd3e6343", "_filesize": 334663, "_sha256": "7d4e6d9d9e209c3125d15a9a20b2591248426d3ce7dcec26193d2242dd3e6343", "_expires": "2027-01-24T11:24:50.000Z", "_created": "2026-10-16T11:20:55.000Z", "_published": "2026-10-16T11:24:51.798Z", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/38892914093", "_status": "success", "_host": "GitHub-Actions", "_bioccheck": { "error": 2, "warning": 4, "note": 14 }, "_upstream": "https://github.com/bioc/CFAssay", "_commit": { "id": "d2d7549e18ead981308fbd170638fdf68f41de52", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777380010 }, "_maintainer": { "name": "Herbert Braselmann", "email": "hbraselmann@online.de", "login": "hbrmuc", "description": "privat", "uuid": 54470535 }, "_distro": "resolute", "_jobs": [ { "job": 116947438854, "time": 107, "config": "bioc-checks", "r": "4.6.1", "check": "ERROR", "artifact": "12042269166" }, { "job": 116947438852, "time": 198, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "12042069835" }, { "job": 116947439008, "time": 161, "config": "linux-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "12043315170" }, { "job": 116947439108, "time": 114, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "12043145584" }, { "job": 116947439182, "time": 83, "config": "macos-release-arm64", "r": "4.6.1", "check": "NOTE", "artifact": "12042304506" }, { "job": 116946613587, "time": 136, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "12041644752" }, { "job": 116947438944, "time": 68, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "12043110235" }, { "job": 116947438934, "time": 51, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "12042264022" }, { "job": 116947439151, "time": 59, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "NOTE", "artifact": "12042004519" }, { "job": 116947439058, "time": 51, "config": "windows-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "12042234159" } ], "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.10.0", "role": "Depends" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.47.0", "bioc": "3.24", "repository": "bioc" }, { "branch": "release", "version": "1.46.0", "bioc": "3.23", "repository": "bioc" } ], "_topics": [ "cellbasedassays", "cellbiology", "immunooncology", "regression", "survival" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 477, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 344, "source": "https://www.bioconductor.org/packages/stats/bioc/CFAssay" }, "_mentions": 6, "_searchresults": 0, "_rbuild": "4.6.1", "_assets": [ "extra/CFAssay.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "cellsurvLQdiff", "cellsurvLQfit", "cfa2way", "pes", "plot.cellsurvLQfit", "plotExp", "plotExp.cellsurvLQfit", "plotExp.cfa2way", "plotExp.default", "print.cellsurvLQdiff", "print.cellsurvLQfit", "print.cfa2way", "sfpmean" ], "_help": [ { "page": "cellsurvLQdiff", "title": "Comparison of two linear-quadratic cell survival curves", "topics": [ "cellsurvLQdiff" ] }, { "page": "cellsurvLQfit", "title": "Fit the linear-quadratic (LQ) model to cell survival data", "topics": [ "cellsurvLQfit" ] }, { "page": "cfa2way", "title": "Two-way analysis for cell survival data", "topics": [ "cfa2way" ] }, { "page": "pes", "title": "Calculation of plating efficiencies from a curve data set containing one specified curve", "topics": [ "pes" ] }, { "page": "plot.cellsurvLQfit", "title": "Plot of an LQ model fit", "topics": [ "plot.cellsurvLQfit" ] }, { "page": "plotExp", "title": "Generic plotting of experimental repeats", "topics": [ "plotExp" ] }, { "page": "plotExp.cellsurvLQfit", "title": "Diagnostic plots of LQ model versus experiments", "topics": [ "plotExp.cellsurvLQfit" ] }, { "page": "plotExp.cfa2way", "title": "Diagnostic plot of experimental replicates for two-way analysis of cell survival data", "topics": [ "plotExp.cfa2way" ] }, { "page": "plotExp.default", "title": "Default function for plotting of experimental repeats", "topics": [ "plotExp.default" ] }, { "page": "print.cellsurvLQdiff", "title": "Print test results of comparison of two linear-quadratic cell survival curves", "topics": [ "print.cellsurvLQdiff" ] }, { "page": "print.cellsurvLQfit", "title": "Print summary of an LQ-model fit for cell survival data", "topics": [ "print.cellsurvLQfit" ] }, { "page": "print.cfa2way", "title": "Print summary of two-way analysis for cell survival data.", "topics": [ "print.cfa2way" ] }, { "page": "sfpmean", "title": "Pointwise mean survival fractions for curves with several experimental replicates", "topics": [ "sfpmean" ] } ], "_rundeps": [], "_vignettes": [ { "source": "cfassay.Rnw", "filename": "cfassay.pdf", "title": "CFAssay", "engine": "utils::Sweave", "headings": [ "Overview", "Example: Linear-quadratic model for cell survival curves", "Example: ANOVA for experimental two-way design" ], "created": "2014-10-11 00:28:51", "modified": "2020-03-29 16:53:27", "commits": 4 } ], "_score": 4.079181246047625, "_indexed": true, "_nocasepkg": "cfassay", "_universes": [ "bioc", "hbrmuc" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.47.0", "date": "2026-10-16T11:24:24.000Z", "distro": "resolute", "commit": "d2d7549e18ead981308fbd170638fdf68f41de52", "fileid": "https://r2.ropensci.org/d0c83777984f482d6b57ccd35abbfa8d2bf340969d0b81050a03f8aa384d1e70", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38892914093" }, { "r": "4.6.1", "os": "linux", "version": "1.47.0", "date": "2026-10-16T11:23:44.000Z", "distro": "resolute", "commit": "d2d7549e18ead981308fbd170638fdf68f41de52", "fileid": "https://r2.ropensci.org/31158b0229a3a5053080d6b680492253be97edcd41e0627dd73ae8db574bc1b5", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38892914093" }, { "r": "4.5.3", "os": "mac", "version": "1.47.0", "date": "2026-10-16T11:22:57.000Z", "commit": "d2d7549e18ead981308fbd170638fdf68f41de52", "fileid": "https://r2.ropensci.org/f9b6ff46fda8c45d2fb9f3eb90ab0d73ffaaf8a0d6ab18599583010d670f10c0", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38892914093" }, { "r": "4.6.1", "os": "mac", "version": "1.47.0", "date": "2026-10-16T11:22:30.000Z", "commit": "d2d7549e18ead981308fbd170638fdf68f41de52", "fileid": "https://r2.ropensci.org/2928980efccd32a3b3514fcd0dd9d59b1788554fed6209a5bad71609b1e9380f", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38892914093" }, { "r": "4.6.0", "os": "wasm", "version": "1.47.0", "date": "2026-10-16T11:22:21.000Z", "commit": "d2d7549e18ead981308fbd170638fdf68f41de52", "fileid": "https://r2.ropensci.org/8eea48a3303173f1939f518b51e072a6ec401d92051630e0ac63f22c5aac28ae", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38892914093" }, { "r": "4.7.0", "os": "win", "version": "1.47.0", "date": "2026-10-16T11:21:52.000Z", "commit": "d2d7549e18ead981308fbd170638fdf68f41de52", "fileid": "https://r2.ropensci.org/878ad69e026de6f9c72e72ce692baf56f39d7d278b8e42507428df039a55ccbc", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38892914093" }, { "r": "4.5.3", "os": "win", "version": "1.47.0", "date": "2026-10-16T11:21:55.000Z", "commit": "d2d7549e18ead981308fbd170638fdf68f41de52", "fileid": "https://r2.ropensci.org/6fba5e4a53232a451eee03779c10f5d08e8570ea86901e694d913ef5c604111e", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38892914093" }, { "r": "4.6.1", "os": "win", "version": "1.47.0", "date": "2026-10-16T11:21:53.000Z", "commit": "d2d7549e18ead981308fbd170638fdf68f41de52", "fileid": "https://r2.ropensci.org/9fd24c03c341799c88ec631318b378c84295931d1af75cf2f3173c6c954e6be5", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38892914093" } ] }