{ "_id": "6ad1d67d0edca5be2502225d", "Package": "CDI", "Version": "1.11.0", "Date": "2026-03-15", "Title": "Clustering Deviation Index (CDI)", "Description": "Single-cell RNA-sequencing (scRNA-seq) is widely used to\nexplore cellular variation. The analysis of scRNA-seq data\noften starts from clustering cells into subpopulations. This\ninitial step has a high impact on downstream analyses, and\nhence it is important to be accurate. However, there have not\nbeen unsupervised metric designed for scRNA-seq to evaluate\nclustering performance. Hence, we propose clustering deviation\nindex (CDI), an unsupervised metric based on the modeling of\nscRNA-seq UMI counts to evaluate clustering of cells.", "Authors@R": "c(person(\"Jiyuan\", \"Fang\", email = \"jfanglovestats@gmail.com\", role = c(\"cre\", \"aut\"), comment=c(ORCID=\"0000-0002-5004-4138\")), \nperson(\"Jichun\", \"Xie\", email = \"jichun.xie@duke.edu\", role = c(\"ctb\")),\nperson(\"Cliburn\", \"Chan\", email = \"cliburn.chan@duke.edu\", role = c(\"ctb\")),\nperson(\"Kouros\", \"Owzar\", email = \"kouros.owzar@duke.edu\", role = c(\"ctb\")),\nperson(\"Liuyang\", \"Wang\", email = \"liuyang.wang@duke.edu\", role = c(\"ctb\")),\nperson(\"Diyuan\", \"Qin\", email = \"diyuan.qin@duke.edu\", role = c(\"ctb\")),\nperson(\"Qi-Jing\", \"Li\", email = \"qi-jing.li@duke.edu\", role = c(\"ctb\")))", "biocViews": "SingleCell, Software, Clustering, Visualization, Sequencing,\nRNASeq, CellBasedAssays", "URL": "https://github.com/jichunxie/CDI", "BugReports": "https://github.com/jichunxie/CDI/issues", "RoxygenNote": "7.2.3", "VignetteBuilder": "knitr", "License": "GPL-3 + file LICENSE", "Encoding": "UTF-8", "Config/pak/sysreqs": "cmake libglpk-dev make libicu-dev libpng-dev\nlibuv1-dev libxml2-dev libssl-dev python3 zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 13:01:09 UTC", "RemoteUrl": "https://github.com/bioc/CDI", "RemoteRef": "HEAD", "RemoteSha": "191ae443191765e67e31d38ed1a0da1df314157c", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-16 07:20:40 UTC", "User": "root" }, "Author": "Jiyuan Fang [cre, aut] (ORCID: ),\nJichun Xie [ctb],\nCliburn Chan [ctb],\nKouros Owzar [ctb],\nLiuyang Wang [ctb],\nDiyuan Qin [ctb],\nQi-Jing Li [ctb]", "Maintainer": "Jiyuan Fang ", "_user": "bioc", "_type": "src", "_file": "CDI_1.11.0.tar.gz", "_fileid": "https://r2.ropensci.org/acab3dc63a4852fd3ecd0583714c970facc3886510f62556c6c3e15beb924667", "_filesize": 1981885, "_sha256": 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