{
  "_id": "6a1efc48b401979e7341966e",
  "Package": "BufferedMatrixMethods",
  "Type": "Package",
  "Title": "Microarray Data related methods that utlize BufferedMatrix\nobjects",
  "Version": "1.77.0",
  "Date": "2012-09-14",
  "Author": "Ben Bolstad <bmb@bmbolstad.com>",
  "Maintainer": "Ben Bolstad <bmb@bmbolstad.com>",
  "LazyLoad": "Yes",
  "Description": "Microarray analysis methods that use BufferedMatrix\nobjects",
  "License": "GPL (>= 2)",
  "URL": "https://github.bom/bmbolstad/BufferedMatrixMethods",
  "biocViews": "Infrastructure",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:32:09 UTC",
  "RemoteUrl": "https://github.com/bioc/BufferedMatrixMethods",
  "RemoteRef": "HEAD",
  "RemoteSha": "fc228d2173bde9e615e36e184302f2019ddda226",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-05-18 10:17:52 UTC",
    "User": "root"
  },
  "MD5sum": "7b8671aa2705515f82bc93281c9c3214",
  "_user": "bioc",
  "_type": "src",
  "_file": "BufferedMatrixMethods_1.77.0.tar.gz",
  "_fileid": "4bdcc983bfe9fef09b5986b7b1910f1f5de62710054b51bbd558d465b736b67b",
  "_filesize": 107324,
  "_sha256": "4bdcc983bfe9fef09b5986b7b1910f1f5de62710054b51bbd558d465b736b67b",
  "_created": "2026-05-18T10:17:52.000Z",
  "_published": "2026-06-02T15:52:40.463Z",
  "_jobs": [
    {
      "job": 79113364973,
      "time": 116,
      "config": "bioc-checks",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7055194443"
    },
    {
      "job": 79113365489,
      "time": 125,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7055198170"
    },
    {
      "job": 79113364874,
      "time": 161,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7055210458"
    },
    {
      "job": 79113366015,
      "time": 104,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7055190786"
    },
    {
      "job": 79113365530,
      "time": 131,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7055200302"
    },
    {
      "job": 79113365797,
      "time": 88,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7055185612"
    },
    {
      "job": 79113365486,
      "time": 218,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7055229670"
    },
    {
      "job": 79113365107,
      "time": 93,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7055186589"
    },
    {
      "job": 79113364763,
      "time": 181,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7055217557"
    },
    {
      "job": 79113365085,
      "time": 149,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7055154584"
    },
    {
      "job": 79113363983,
      "time": 86,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7362882085"
    },
    {
      "job": 79113364995,
      "time": 93,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7055187376"
    },
    {
      "job": 79113365206,
      "time": 73,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7055179650"
    },
    {
      "job": 79113365149,
      "time": 73,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7055181199"
    }
  ],
  "_bioccheck": {
    "error": 3,
    "warning": 1,
    "note": 13
  },
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26027319580",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/bioc/BufferedMatrixMethods",
  "_commit": {
    "id": "fc228d2173bde9e615e36e184302f2019ddda226",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777379529
  },
  "_maintainer": {
    "name": "Ben Bolstad",
    "email": "bmb@bmbolstad.com",
    "login": "bmbolstad",
    "description": "",
    "uuid": 5719304
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.6.0",
      "role": "Depends"
    },
    {
      "package": "BufferedMatrix",
      "version": ">= 1.3.0",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Depends"
    },
    {
      "package": "BufferedMatrix",
      "role": "LinkingTo"
    },
    {
      "package": "affyio",
      "role": "Suggests"
    },
    {
      "package": "affy",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.77.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.76.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "infrastructure"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 402,
    "source": "https://www.bioconductor.org/packages/stats/bioc/BufferedMatrixMethods"
  },
  "_mentions": 3,
  "_searchresults": 2,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/BufferedMatrixMethods.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "bg.correct.BufferedMatrix",
    "BufferedMatrix.bg.correct.normalize.quantiles",
    "BufferedMatrix.justRMA",
    "BufferedMatrix.read.celfiles",
    "BufferedMatrix.read.probematrix",
    "median.polish.summarize",
    "normalize.BufferedMatrix.quantiles"
  ],
  "_help": [
    {
      "page": "BM_justRMA",
      "title": "Use BufferedMatrix objects to facilitate RMA computation with low memory overhead",
      "topics": [
        "BufferedMatrix.justRMA"
      ]
    },
    {
      "page": "BM_readcelfiles",
      "title": "Read CEL file data into PM or MM BufferedMatrix",
      "topics": [
        "BufferedMatrix.read.celfiles"
      ]
    },
    {
      "page": "BM_affyDataInput",
      "title": "Read CEL file data into PM or MM BufferedMatrix",
      "topics": [
        "BufferedMatrix.read.probematrix"
      ]
    },
    {
      "page": "rmapreprocess.bufferedmatrix",
      "title": "RMA preprocessing functions that work on BufferedMatrix objects",
      "topics": [
        "bg.correct.BufferedMatrix",
        "BufferedMatrix.bg.correct.normalize.quantiles",
        "median.polish.summarize",
        "median.polish.summarize,BufferedMatrix-method",
        "normalize.BufferedMatrix.quantiles"
      ]
    }
  ],
  "_rundeps": [
    "BufferedMatrix"
  ],
  "_score": 2.778151250383644,
  "_indexed": true,
  "_nocasepkg": "bufferedmatrixmethods",
  "_universes": [
    "bioc",
    "bmbolstad"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.77.0",
      "date": "2026-05-18T10:20:05.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "fc228d2173bde9e615e36e184302f2019ddda226",
      "fileid": "981a9a9b77e9b4eff17fa2d9986e0426d7ccdd409ffc385b23c4fa92c882684b",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26027319580"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.77.0",
      "date": "2026-05-18T10:20:39.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "fc228d2173bde9e615e36e184302f2019ddda226",
      "fileid": "8c79e00c5867af7c622cdfb7387c0b9f344dedf593cbdcbb109b3a31ee72ec24",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26027319580"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.77.0",
      "date": "2026-05-18T10:19:45.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "fc228d2173bde9e615e36e184302f2019ddda226",
      "fileid": "b482360f80302b83fd0dbb1f9c756b43f12356d9fdeb04a93a35ec8e9b82adc1",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26027319580"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.77.0",
      "date": "2026-05-18T10:20:08.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "fc228d2173bde9e615e36e184302f2019ddda226",
      "fileid": "80ed18c61e1de492f691f1c1238a935ae38c46579a38c086f6ec20c6bc368a81",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26027319580"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.77.0",
      "date": "2026-05-18T10:19:30.000Z",
      "arch": "aarch64",
      "commit": "fc228d2173bde9e615e36e184302f2019ddda226",
      "fileid": "870fac10fd147c9a3e0a82c49f0337d99f7ca2b00cb6272df9ae86686e7cd1d9",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26027319580"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.77.0",
      "date": "2026-05-18T10:21:04.000Z",
      "arch": "x86_64",
      "commit": "fc228d2173bde9e615e36e184302f2019ddda226",
      "fileid": "698060f195e22189b5d8fb2e466ae2f92943b56925547b91307ea76b51cd47bc",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26027319580"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.77.0",
      "date": "2026-05-18T10:19:29.000Z",
      "arch": "aarch64",
      "commit": "fc228d2173bde9e615e36e184302f2019ddda226",
      "fileid": "d2e471383c68c7cae2ccc7fbff879b5c7cf8d9ca9e468a5bd95e9ef839efd35e",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26027319580"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.77.0",
      "date": "2026-05-18T10:20:26.000Z",
      "arch": "x86_64",
      "commit": "fc228d2173bde9e615e36e184302f2019ddda226",
      "fileid": "79050aa3c6f5fb9a27205655bf8bf593d482084d4d81f01982fb8434d3c3c9e0",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26027319580"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.77.0",
      "date": "2026-05-18T10:19:20.000Z",
      "arch": "x86_64",
      "commit": "fc228d2173bde9e615e36e184302f2019ddda226",
      "fileid": "2fbbe2959c815bca8590ded2b593707c3e2dc6fddcd41fc02b295122a6197aff",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26027319580"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.77.0",
      "date": "2026-05-18T10:19:00.000Z",
      "arch": "x86_64",
      "commit": "fc228d2173bde9e615e36e184302f2019ddda226",
      "fileid": "bebe860ecf3a91f4a555ac2ad11289ed6b156032203672ed4273bf3f3b620606",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26027319580"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.77.0",
      "date": "2026-05-18T10:19:04.000Z",
      "arch": "x86_64",
      "commit": "fc228d2173bde9e615e36e184302f2019ddda226",
      "fileid": "07c08619fed04d6200138619c1bae675219e7afacbca7dd02dc03e59a27ae037",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26027319580"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.77.0",
      "date": "2026-06-02T15:52:18.000Z",
      "arch": "emscripten",
      "commit": "fc228d2173bde9e615e36e184302f2019ddda226",
      "fileid": "5c5df2ced87bc14cfddf109edb7758a3947d51337f43641e9df7ad3ee0910b9d",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26027319580"
    }
  ]
}