{
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  "Package": "BiocPkgTools",
  "Type": "Package",
  "Title": "Collection of simple tools for learning about Bioconductor\nPackages",
  "Version": "1.31.7",
  "Date": "2026-05-14",
  "Authors@R": "c( \nperson(\"Shian\", \"Su\", role=c(\"aut\", \"ctb\"), email = \"su.s@wehi.edu.au\"),\nperson(\"Lori\", \"Shepherd\", role=\"ctb\", email = \"Lori.Shepherd@roswellpark.org\"),\nperson(\"Marcel\", \"Ramos\", , \"marcel.ramos@sph.cuny.edu\", c(\"aut\", \"ctb\"),\nc(ORCID = \"0000-0002-3242-0582\")),\nperson(\"Felix G.M.\", \"Ernst\", role=\"ctb\", email = \"felix.gm.ernst@outlook.com\"),\nperson(\"Jennifer\",\"Wokaty\", role=\"ctb\", email=\"jennifer.wokaty@gmail.com\"),\nperson(\"Charlotte\", \"Soneson\", role=\"ctb\", email = \"charlottesoneson@gmail.com\"),\nperson(\"Martin\", \"Morgan\", role=\"ctb\", email = \"martin.morgan@roswellpark.org\"),\nperson(\"Vince\", \"Carey\", role=\"ctb\", email=\"stvjc@channing.harvard.edu\"),\nperson(\"Sean\", \"Davis\", , \"seandavi@gmail.com\", c(\"aut\", \"cre\"),\nc(ORCID = \"0000-0002-8991-6458\"))\n)",
  "Description": "Bioconductor has a rich ecosystem of metadata around\npackages, usage, and build status. This package is a simple\ncollection of functions to access that metadata from R. The\ngoal is to expose metadata for data mining and value-added\nfunctionality such as package searching, text mining, and\nanalytics on packages.",
  "VignetteBuilder": "knitr",
  "License": "MIT + file LICENSE",
  "BugReports": "https://github.com/seandavi/BiocPkgTools/issues/new",
  "URL": "https://github.com/seandavi/BiocPkgTools",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "SystemRequirements": "mailsend-go",
  "biocViews": "Software, Infrastructure",
  "Config/roxygen2/version": "8.0.0",
  "Config/pak/sysreqs": "cmake git libglpk-dev make libicu-dev libuv1-dev\nlibxml2-dev libssl-dev libx11-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-05-20 21:03:21 UTC",
  "RemoteUrl": "https://github.com/bioc/BiocPkgTools",
  "RemoteRef": "HEAD",
  "RemoteSha": "4eefd1f610b659a004b7b1ab48ef2d77165d87aa",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-23 09:34:27 UTC",
    "User": "root"
  },
  "Author": "Shian Su [aut, ctb],\nLori Shepherd [ctb],\nMarcel Ramos [aut, ctb] (ORCID:\n<https://orcid.org/0000-0002-3242-0582>),\nFelix G.M. Ernst [ctb],\nJennifer Wokaty [ctb],\nCharlotte Soneson [ctb],\nMartin Morgan [ctb],\nVince Carey [ctb],\nSean Davis [aut, cre] (ORCID: <https://orcid.org/0000-0002-8991-6458>)",
  "Maintainer": "Sean Davis <seandavi@gmail.com>",
  "MD5sum": "735dbdd261e40d901fd24be3fdc789aa",
  "_user": "bioc",
  "_type": "src",
  "_file": "BiocPkgTools_1.31.7.tar.gz",
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  "_filesize": 1117905,
  "_sha256": "1be18933afd6b568a88f954d91548c65d4de6771e4b4a867da90f00fb48a15a2",
  "_created": "2026-05-23T09:34:27.000Z",
  "_published": "2026-05-23T09:44:55.742Z",
  "_jobs": [
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    "infrastructure",
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  "_contributors": [
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    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
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    "source": "https://www.bioconductor.org/packages/stats/bioc/BiocPkgTools"
  },
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  "_devurl": "https://github.com/seandavi/biocpkgtools",
  "_searchresults": 98,
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  "_assets": [
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    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/seandavi/biocpkgtools",
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
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    "anacondaDownloadStats",
    "biocBuildEmail",
    "biocBuildReport",
    "biocBuildReportDB",
    "biocBuildStatusDB",
    "biocDownloadStats",
    "biocExplore",
    "biocMaintained",
    "biocPkgList",
    "biocPkgRanges",
    "biocRevDepEmail",
    "biocVIEWSdb",
    "buildClassDepData",
    "buildClassDepFromPackage",
    "buildClassDepGraph",
    "buildPkgDependencyDataFrame",
    "buildPkgDependencyIgraph",
    "CRANstatus",
    "firstInBioc",
    "get_bioc_data",
    "get_cre_orcids",
    "getBiocVignette",
    "getPackageInfo",
    "getPkgYearsInBioc",
    "githubDetails",
    "githubURLParts",
    "hasBiocMaint",
    "inducedSubgraphByPkgs",
    "latestPkgStats",
    "orcid_table",
    "pkgBiocDeps",
    "pkgBiocRevDeps",
    "pkgCombDependencyGain",
    "pkgDepImports",
    "pkgDepMetrics",
    "pkgDownloadRank",
    "pkgDownloadStats",
    "pkgToolsCache",
    "plotClassDep",
    "plotClassDepData",
    "plotClassDepGraph",
    "problemPage",
    "repositoryStats",
    "sentHistory",
    "setCache",
    "subgraphByDegree",
    "templatePath"
  ],
  "_help": [
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      "page": "dot-get_cre_orcid",
      "title": "get the ORCID id from cre field of Authors@R in packageDescription result",
      "topics": [
        ".get_cre_orcid"
      ]
    },
    {
      "page": "activitySince",
      "title": "What are the issues, pulls, commits created since a date?",
      "topics": [
        "activitySince"
      ]
    },
    {
      "page": "anacondaDownloadStats",
      "title": "Get download statistics for Bioconductor packages distributed via Anaconda.",
      "topics": [
        "anacondaDownloadStats"
      ]
    },
    {
      "page": "biocBuildEmail",
      "title": "Create and copy e-mail package notification template to clipboard",
      "topics": [
        "biocBuildEmail",
        "sentHistory"
      ]
    },
    {
      "page": "biocBuildReport",
      "title": "Tidy Bioconductor build report results",
      "topics": [
        "biocBuildReport"
      ]
    },
    {
      "page": "biocBuildReportDB",
      "title": "Parse the Build Report tarball for a Bioconductor release",
      "topics": [
        "biocBuildReportDB"
      ]
    },
    {
      "page": "biocBuildStatusDB",
      "title": "Download and parse the build status information for Bioconductor packages",
      "topics": [
        "biocBuildStatusDB"
      ]
    },
    {
      "page": "biocDownloadStats",
      "title": "Get Bioconductor download statistics",
      "topics": [
        "biocDownloadStats"
      ]
    },
    {
      "page": "biocExplore",
      "title": "Explore Bioconductor packages interactively",
      "topics": [
        "biocExplore"
      ]
    },
    {
      "page": "biocMaintained",
      "title": "Bioconductor Maintained Packages",
      "topics": [
        "biocMaintained",
        "hasBiocMaint"
      ]
    },
    {
      "page": "biocPkgList",
      "title": "Get full Bioconductor software package listing, with details",
      "topics": [
        "biocPkgList"
      ]
    },
    {
      "page": "biocPkgRanges",
      "title": "Grab build report results from BUILD_STATUS_DB for a particular package range",
      "topics": [
        "biocPkgRanges"
      ]
    },
    {
      "page": "BiocPkgTools",
      "title": "BiocPkgTools: Examine and analyze Bioconductor package metadata",
      "topics": [
        "BiocPkgTools-package",
        "BiocPkgTools"
      ]
    },
    {
      "page": "BiocPkgTools-cache",
      "title": "Manage cache for BiocPkgTools",
      "topics": [
        "BiocPkgTools-cache",
        "pkgToolsCache",
        "setCache"
      ]
    },
    {
      "page": "biocRevDepEmail",
      "title": "Notify downstream maintainers of changes in upstream packages",
      "topics": [
        "biocRevDepEmail"
      ]
    },
    {
      "page": "biocVIEWSdb",
      "title": "Parse and return the VIEWS file for a Bioconductor Release",
      "topics": [
        "biocVIEWSdb"
      ]
    },
    {
      "page": "buildPkgDependencyDataFrame",
      "title": "Work with Bioconductor package dependencies",
      "topics": [
        "buildPkgDependencyDataFrame"
      ]
    },
    {
      "page": "buildPkgDependencyIgraph",
      "title": "Work with package dependencies as a graph",
      "topics": [
        "buildPkgDependencyIgraph"
      ]
    },
    {
      "page": "class-dependencies",
      "title": "Retrieve Class relationships",
      "topics": [
        "buildClassDepData",
        "buildClassDepFromPackage",
        "buildClassDepGraph",
        "class-dependencies",
        "plotClassDep",
        "plotClassDepData",
        "plotClassDepGraph"
      ]
    },
    {
      "page": "CRANstatus",
      "title": "Check the CRAN build report page and email a notification",
      "topics": [
        "CRANstatus"
      ]
    },
    {
      "page": "firstInBioc",
      "title": "When did a package enter Bioconductor?",
      "topics": [
        "firstInBioc"
      ]
    },
    {
      "page": "generateBiocPkgDOI",
      "title": "Generate a DOI for a Bioconductor package",
      "topics": [
        "generateBiocPkgDOI"
      ]
    },
    {
      "page": "get_bioc_data",
      "title": "Get data from Bioconductor",
      "topics": [
        "get_bioc_data"
      ]
    },
    {
      "page": "get_cre_orcids",
      "title": "get ORCID ids from cre fields of Authors@R in packageDescription results",
      "topics": [
        "get_cre_orcids"
      ]
    },
    {
      "page": "getBiocVignette",
      "title": "Download a Bioconductor vignette",
      "topics": [
        "getBiocVignette"
      ]
    },
    {
      "page": "getPackageInfo",
      "title": "Generate needed information to create DOI from a package directory.",
      "topics": [
        "getPackageInfo"
      ]
    },
    {
      "page": "getPkgYearsInBioc",
      "title": "Calculate the years in Bioconductor",
      "topics": [
        "getPkgYearsInBioc"
      ]
    },
    {
      "page": "githubDetails",
      "title": "Get package details from GitHub",
      "topics": [
        "githubDetails"
      ]
    },
    {
      "page": "githubURLParts",
      "title": "Extract GitHub user and repo name from GitHub URL",
      "topics": [
        "githubURLParts"
      ]
    },
    {
      "page": "inducedSubgraphByPkgs",
      "title": "Return a minimal subgraph based on package name(s)",
      "topics": [
        "inducedSubgraphByPkgs"
      ]
    },
    {
      "page": "latestPkgStats",
      "title": "Summary of the latest package statistics",
      "topics": [
        "latestPkgStats"
      ]
    },
    {
      "page": "orcid_table",
      "title": "Obtain employment data from ORCID",
      "topics": [
        "orcid_table"
      ]
    },
    {
      "page": "pkgBiocDeps",
      "title": "Look up a package's Bioconductor dependencies",
      "topics": [
        "pkgBiocDeps"
      ]
    },
    {
      "page": "pkgBiocRevDeps",
      "title": "Obtain all the reverse dependencies for a Bioconductor package",
      "topics": [
        "pkgBiocRevDeps",
        "summary.biocrevdeps"
      ]
    },
    {
      "page": "pkgCombDependencyGain",
      "title": "Calculate dependency gain achieved by excluding combinations of packages",
      "topics": [
        "pkgCombDependencyGain"
      ]
    },
    {
      "page": "pkgDepImports",
      "title": "Report package imported functionality",
      "topics": [
        "pkgDepImports"
      ]
    },
    {
      "page": "pkgDepMetrics",
      "title": "Report package dependency burden",
      "topics": [
        "pkgDepMetrics"
      ]
    },
    {
      "page": "pkgDownloadRank",
      "title": "What is a package's download rank?",
      "topics": [
        "pkgDownloadRank"
      ]
    },
    {
      "page": "pkgDownloadStats",
      "title": "Get Bioconductor download statistics for a package",
      "topics": [
        "pkgDownloadStats"
      ]
    },
    {
      "page": "problemPage",
      "title": "generate hyperlinked HTML for build reports for Bioc packages",
      "topics": [
        "problemPage"
      ]
    },
    {
      "page": "repositoryStats",
      "title": "Bioconductor Binary Repository Statistics",
      "topics": [
        "print.repositoryStats",
        "repositoryStats"
      ]
    },
    {
      "page": "subgraphByDegree",
      "title": "Subset graph by degree",
      "topics": [
        "subgraphByDegree"
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