{ "_id": "6ae75b391e2c7b3a4f53023b", "Package": "BioQC", "Type": "Package", "Title": "Detect tissue heterogeneity in expression profiles with gene\nsets", "Version": "1.41.0", "Date": "2021-08-18", "Authors@R": "c(\nperson(\"Jitao David\", \"Zhang\", email=\"jitao_david.zhang@roche.com\", role = c(\"cre\", \"aut\")),\nperson(\"Laura\", \"Badi\", role=\"aut\"),\nperson(\"Gregor\", \"Sturm\", email=\"mail@gregor-sturm.de\", role=c(\"aut\")),\nperson(\"Roland\", \"Ambs\", role=\"aut\"),\nperson(\"Iakov\", \"Davydov\", role=\"aut\"))", "Description": "BioQC performs quality control of high-throughput\nexpression data based on tissue gene signatures. It can detect\ntissue heterogeneity in gene expression data. The core\nalgorithm is a Wilcoxon-Mann-Whitney test that is optimised for\nhigh performance.", "biocViews": "GeneExpression,QualityControl,StatisticalMethod,\nGeneSetEnrichment", "Collate": "AllClasses.R AllMethods.R as.GmtList.R GmtList-funcs.R\nreadSignedGmt.R uniqGenesetsByNamespace.R appendGmtList.R\nutils.R entropy.R gini.R readGmt.R matchGenes.R wmwTest.R\nreadCurrentSignatures.R prettySigNames.R leadingEdge.R", "VignetteBuilder": "knitr", "License": "GPL (>=3) + file LICENSE", "Encoding": "UTF-8", "RoxygenNote": "7.1.1", "URL": "https://accio.github.io/BioQC", "BugReports": "https://accio.github.io/BioQC/issues", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:42:16 UTC", "RemoteUrl": "https://github.com/bioc/BioQC", "RemoteRef": "HEAD", "RemoteSha": "7aa53c346c42a227972b1bbab51e9778551df06d", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-11-01 13:25:41 UTC", "User": "root" }, "Author": "Jitao David Zhang [cre, aut],\nLaura Badi [aut],\nGregor Sturm [aut],\nRoland Ambs [aut],\nIakov Davydov [aut]", "Maintainer": "Jitao David Zhang ", "_user": "bioc", "_type": "src", "_file": "BioQC_1.41.0.tar.gz", "_fileid": "https://r2.ropensci.org/d0500f254ebea8d23d7d746c21e4536292a10c6fb294cd404f63dc4c8c7e019f", "_filesize": 5523434, "_sha256": "d0500f254ebea8d23d7d746c21e4536292a10c6fb294cd404f63dc4c8c7e019f", "_expires": "2027-02-09T15:31:03.000Z", "_created": "2026-11-01T13:25:41.000Z", "_published": "2026-11-01T15:31:05.415Z", "_upstream": "https://github.com/bioc/BioQC", "_status": "success", "_maintainer": { "name": "Jitao David Zhang", "email": "jitao_david.zhang@roche.com", "login": "accio", "description": "A Computational Biologist in Drug Discovery", "uuid": 1397024 }, "_jobs": [ { "job": 124861932610, "time": 196, "config": "bioc-checks", "r": "4.6.2", "check": "ERROR", "artifact": "13086700795" }, { "job": 124861932442, "time": 160, "config": "linux-devel-arm64", "r": "4.7.0", "check": "NOTE", "artifact": "13085383361" }, { "job": 124861932421, "time": 298, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "13086448751" }, { "job": 124861932495, "time": 148, "config": "linux-release-arm64", "r": "4.6.2", "check": "NOTE", "artifact": "13085880169" }, { "job": 124861932598, "time": 252, "config": "linux-release-x86_64", "r": "4.6.2", "check": "NOTE", "artifact": "13086506952" }, { "job": 124861932554, "time": 150, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "13089163372" }, { "job": 124861932449, "time": 292, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "NOTE", "artifact": "13089616947" }, { "job": 124861932454, "time": 104, "config": "macos-release-arm64", "r": "4.6.2", "check": "NOTE", "artifact": "13089027387" }, { "job": 124861932438, "time": 432, "config": "macos-release-x86_64", "r": "4.6.2", "check": "NOTE", "artifact": "13089597638" }, { "job": 124858165999, "time": 365, "config": "source", "r": "4.6.2", "check": "OK", "artifact": "13085427156" }, { "job": 124861932393, "time": 162, "config": "wasm-release", "r": "4.6.0", "check": "FAIL", "artifact": "" }, { "job": 124861932511, "time": 233, "config": "windows-devel-arm64", "r": "4.7.0", "check": "NOTE", "artifact": "13085019961" }, { "job": 124861932491, "time": 406, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "13086026198" }, { "job": 124861932519, "time": 358, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "NOTE", "artifact": "13085962124" }, { "job": 124861932526, "time": 245, "config": "windows-release-arm64", "r": "4.6.2", "check": "NOTE", "artifact": "13085283908" }, { "job": 124861932514, "time": 260, "config": "windows-release-x86_64", "r": "4.6.2", "check": "NOTE", "artifact": "13085911884" } ], "_bioccheck": { "error": 1, "warning": 1, "note": 8 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/41309441623", "_commit": { "id": "7aa53c346c42a227972b1bbab51e9778551df06d", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777380136 }, "_distro": "resolute", "_host": "GitHub-Actions", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "Biobase", "role": "Depends" }, { "package": "Rcpp", "role": "LinkingTo" }, { "package": "edgeR", "role": "Imports" }, { "package": "Rcpp", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "testthat", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "lattice", "role": "Suggests" }, { "package": "latticeExtra", "role": "Suggests" }, { "package": "rbenchmark", "role": "Suggests" }, { "package": "gplots", "role": "Suggests" }, { "package": "gridExtra", "role": "Suggests" }, { "package": "org.Hs.eg.db", "role": "Suggests" }, { "package": "hgu133plus2.db", "role": "Suggests" }, { "package": "ggplot2", "role": "Suggests" }, { "package": "reshape2", "role": "Suggests" }, { "package": "plyr", "role": "Suggests" }, { "package": "ineq", "role": "Suggests" }, { "package": "covr", "role": "Suggests" }, { "package": "limma", "role": "Suggests" }, { "package": "RColorBrewer", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 1, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.41.0", "bioc": "3.24", "repository": "bioc" }, { "branch": "release", "version": "1.40.0", "bioc": "3.23", "repository": "bioc" } ], "_topics": [ "geneexpression", "qualitycontrol", "statisticalmethod", "genesetenrichment", "cpp" ], "_stars": 5, "_contributors": [ { "user": "accio", "count": 488, "uuid": 1397024 }, { "user": "nturaga", "count": 12, "uuid": 2746443 }, { "user": "grst", "count": 5, "uuid": 7051479 }, { "user": "planetmdx", "count": 3, "uuid": 30404750 }, { "user": "dtenenba", "count": 2, "uuid": 2286826 }, { "user": "hpages", "count": 2, "uuid": 8810451 }, { "user": "vobencha", "count": 2, "uuid": 2466173 }, { "user": "idavydov", "count": 1, "uuid": 671660 }, { "user": "jimhester", "count": 1, "uuid": 205275 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 482, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 712, "source": "https://www.bioconductor.org/packages/stats/bioc/BioQC" }, "_mentions": 7, "_devurl": "https://github.com/accio/bioqc", "_pkgdown": "https://accio.github.io/BioQC", "_searchresults": 92, "_abi": { "exports": [ { "key": "BioQC::BaseIndexList", "hash": "54bb9f9fcf28d490" }, { "key": "BioQC::GmtList", "hash": "9312fb62bd95805c" }, { "key": "BioQC::IndexList", "hash": "02b8c50ca1fb9a89" }, { "key": "BioQC::SignedGenesets", "hash": "0094cb3352de184e" }, { "key": "BioQC::SignedIndexList", "hash": "4090a20425366f3f" }, { "key": "BioQC::generic:IndexList", "hash": "adb86b685ac429ff" }, { "key": "BioQC::generic:SignedIndexList", "hash": "ab85edfce1d29adf" }, { "key": "BioQC::generic:matchGenes", "hash": "65a03f83ecd48b64" }, { "key": "BioQC::generic:offset<-", "hash": "8af2c3a43b2a0a49" }, { "key": "BioQC::generic:wmwTest", "hash": "cb19ce1398c69569" } ], "imports": [ { "key": "Rcpp::Rcpp_precious_preserve()", "hash": "33a97ea62b293da6" }, { "key": "Rcpp::Rcpp_precious_remove()", "hash": "63d26947ba7e1377" }, { "key": "Rcpp::demangle()", "hash": "b0cfd6754c5ebc4e" } ] }, "_rbuild": "4.6.2", "_assets": [ "extra/BioQC.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "LICENSE" ], "_homeurl": "https://github.com/accio/bioqc", "_realowner": "bioc", "_cranurl": false, "_exports": [ "absLog10p", "appendGmtList", "as.GmtList", "entropy", "entropyDiversity", "entropySpecificity", "filterBySize", "filterPmat", "getLeadingEdgeIndexFromMatrix", "getLeadingEdgeIndexFromVector", "gini", "GmtList", "gmtlist2signedGenesets", "gsDesc", "gsGeneCount", "gsGenes", "gsName", "gsNamespace", "gsNamespace<-", "gsSize", "hasNamespace", "IndexList", "isValidBaseIndexList", "isValidGmtList", "isValidIndexList", "isValidSignedGenesets", "isValidSignedIndexList", "matchGenes", "offset", "offset<-", "prettySigNames", "readCurrentSignatures", "readGmt", "readSignedGmt", "sampleSpecialization", "setDescAsNamespace", "setNamespace", "show", "SignedGenesets", "SignedIndexList", "simplifyMatrix", "uniqGenesetsByNamespace", "wmwLeadingEdge", "wmwTest", "wmwTestInR" ], "_help": [ { "page": "sub-.GmtList", "title": "Subsetting GmtList object into another GmtList object", "topics": [ "[.GmtList" ] }, { "page": "sub-sub-.GmtList", "title": "Subsetting GmtList object to fetch one gene-set", "topics": [ "[[.GmtList" ] }, { "page": "absLog10p", "title": "Absolute base-10 logarithm of p-values", "topics": [ "absLog10p" ] }, { "page": "appendGmtList", "title": "Append a GmtList object to another one", "topics": [ "appendGmtList" ] }, { "page": "as.GmtList", "title": "Convert a list of gene symbols into a gmtlist", "topics": [ "as.GmtList" ] }, { "page": "BaseIndexList-class", "title": "An S4 class to hold a list of indices, with the possibility to specify the offset of the indices. IndexList and SignedIndexList extend this class", "topics": [ "BaseIndexList-class" ] }, { "page": "entropy", "title": "Shannon entropy", "topics": [ "entropy" ] }, { "page": "entropyDiversity", "title": "Entropy-based sample diversity", "topics": [ "entropyDiversity" ] }, { "page": "entropySpecificity", "title": "Entropy-based gene-expression specificity", "topics": [ "entropySpecificity" ] }, { "page": "filterBySize", "title": "Filter a GmtList by size", "topics": [ "filterBySize" ] }, { "page": "filterPmat", "title": "Filter rows of p-value matrix under the significance threshold", "topics": [ "filterPmat" ] }, { "page": "getLeadingEdgeIndexFromVector", "title": "Getting leading-edge indices from a vector", "topics": [ "getLeadingEdgeIndexFromMatrix", "getLeadingEdgeIndexFromVector" ] }, { "page": "gini", "title": "Calculate Gini Index of a numeric vector", "topics": [ "gini" ] }, { "page": "GmtList", "title": "Convert a list to a GmtList object", "topics": [ "GmtList" ] }, { "page": "GmtList-class", "title": "An S4 class to hold geneset in the GMT file in a list, each item in the list is in in turn a list containing following items: name, desc, and genes.", "topics": [ "GmtList-class" ] }, { "page": "gmtlist2signedGenesets", "title": "Convert gmtlist into a list of signed genesets", "topics": [ "gmtlist2signedGenesets" ] }, { "page": "gsDesc", "title": "Gene-set descriptions", "topics": [ "gsDesc" ] }, { "page": "gsGeneCount", "title": "Gene-set gene counts", "topics": [ "gsGeneCount", "gsSize" ] }, { "page": "gsGenes", "title": "Gene-set member genes", "topics": [ "gsGenes" ] }, { "page": "gsName", "title": "Gene-set names", "topics": [ "gsName" ] }, { "page": "gsNamespace", "title": "Gene-set namespaces", "topics": [ "gsNamespace" ] }, { "page": "setGsNamespace", "title": "gsNamespace<- is the synonym of setGsNamespace", "topics": [ "gsNamespace<-" ] }, { "page": "hasNamespace", "title": "Whether namespace is set", "topics": [ "hasNamespace" ] }, { "page": "IndexList", "title": "Convert a list to an IndexList object", "topics": [ "IndexList", "IndexList,list-method", "IndexList,logical-method", "IndexList,numeric-method" ] }, { "page": "IndexList-class", "title": "An S4 class to hold a list of integers as indices, with the possibility to specify the offset of the indices", "topics": [ "IndexList-class" ] }, { "page": "isValidBaseIndexList", "title": "Function to validate a BaseIndexList object", "topics": [ "isValidBaseIndexList" ] }, { "page": "isValidGmtList", "title": "Function to validate a GmtList object", "topics": [ "isValidGmtList" ] }, { "page": "isValidIndexList", "title": "Function to validate an IndexList object", "topics": [ "isValidIndexList" ] }, { "page": "isValidSignedGenesets", "title": "Function to validate a SignedGenesets object", "topics": [ "isValidSignedGenesets" ] }, { "page": "isValidSignedIndexList", "title": "Function to validate a SignedIndexList object", "topics": [ "isValidSignedIndexList" ] }, { "page": "matchGenes", "title": "Match genes in a list-like object to a vector of genesymbols", "topics": [ "matchGenes", "matchGenes,character,character-method", "matchGenes,character,DGEList-method", "matchGenes,character,eSet-method", "matchGenes,character,matrix-method", "matchGenes,GmtList,character-method", "matchGenes,GmtList,DGEList-method", "matchGenes,GmtList,eSet-method", "matchGenes,GmtList,matrix-method", "matchGenes,SignedGenesets,character-method", "matchGenes,SignedGenesets,DGEList-method", "matchGenes,SignedGenesets,eSet-method", "matchGenes,SignedGenesets,matrix-method" ] }, { "page": "offset", "title": "Get offset from an IndexList object", "topics": [ "offset", "offset,BaseIndexList-method" ] }, { "page": "offset-set", "title": "Set the offset of an 'IndexList' or a 'SignedIndexList' object", "topics": [ "offset-set", "offset<-", "offset<-,IndexList,numeric-method", "offset<-,SignedIndexList,numeric-method" ] }, { "page": "prettySigNames", "title": "Prettify default signature names", "topics": [ "prettySigNames" ] }, { "page": "readCurrentSignatures", "title": "Load current BioQC signatures", "topics": [ "readCurrentSignatures" ] }, { "page": "readGmt", "title": "Read in gene-sets from a GMT file", "topics": [ "readGmt" ] }, { "page": "readSignedGmt", "title": "Read signed GMT files", "topics": [ "readSignedGmt" ] }, { "page": "sampleSpecialization", "title": "Entropy-based sample specialization", "topics": [ "sampleSpecialization" ] }, { "page": "setDescAsNamespace", "title": "Set gene-set description as namespace", "topics": [ "setDescAsNamespace" ] }, { "page": "setNamespace", "title": "Set the namespace field in each gene-set within a GmtList", "topics": [ "setNamespace" ] }, { "page": "show-GmtList-method", "title": "Show method for GmtList", "topics": [ "show,GmtList-method" ] }, { "page": "show-IndexList-method", "title": "Show method for IndexList", "topics": [ "show,IndexList-method" ] }, { "page": "show-SignedGenesets-method", "title": "Show method for SignedGenesets", "topics": [ "show,SignedGenesets-method" ] }, { "page": "show-SignedIndexList-method", "title": "Show method for SignedIndexList", "topics": [ "show,SignedIndexList-method" ] }, { "page": "SignedGenesets", "title": "Convert a list to a SignedGenesets object", "topics": [ "SignedGenesets" ] }, { "page": "SignedGenesets-class", "title": "An S4 class to hold signed genesets, each item in the list is in in turn a list containing following items: name, pos, and neg.", "topics": [ "SignedGenesets-class" ] }, { "page": "SignedIndexList", "title": "Convert a list into a SignedIndexList", "topics": [ "SignedIndexList", "SignedIndexList,list-method" ] }, { "page": "SignedIndexList-class", "title": "An S4 class to hold a list of signed integers as indices, with the possibility to specify the offset of the indices", "topics": [ "SignedIndexList-class" ] }, { "page": "simplifyMatrix", "title": "Simplify matrix in case of single row/columns", "topics": [ "simplifyMatrix" ] }, { "page": "uniqGenesetsByNamespace", "title": "Make names of gene-sets unique by namespace, and member genes of gene-sets unique", "topics": [ "uniqGenesetsByNamespace" ] }, { "page": "valTypes", "title": "prints the options of valTypes of wmwTest", "topics": [ "valTypes" ] }, { "page": "wmwLeadingEdge", "title": "Identify BioQC leading-edge genes of one gene-set", "topics": [ "wmwLeadingEdge" ] }, { "page": "wmwTest", "title": "Wilcoxon-Mann-Whitney rank sum test for high-throughput expression profiling data", "topics": [ "wmwTest", "wmwTest,ANY,list-method", "wmwTest,ANY,logical-method", "wmwTest,ANY,numeric-method", "wmwTest,eSet,GmtList-method", "wmwTest,eSet,list-method", "wmwTest,eSet,logical-method", "wmwTest,eSet,numeric-method", "wmwTest,eSet,SignedGenesets-method", "wmwTest,eSet,SignedIndexList-method", "wmwTest,matrix,GmtList-method", "wmwTest,matrix,IndexList-method", "wmwTest,matrix,SignedGenesets-method", "wmwTest,matrix,SignedIndexList-method", "wmwTest,numeric,IndexList-method", "wmwTest,numeric,SignedIndexList-method" ] }, { "page": "wmwTestInR", "title": "Wilcoxon-Mann-Whitney test in R", "topics": [ "wmwTestInR" ] } ], "_readme": "https://github.com/bioc/BioQC/raw/HEAD/README.md", "_rundeps": [ "Biobase", "BiocGenerics", "edgeR", "generics", "limma", "Rcpp", "statmod" ], "_sysdeps": [ { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "16-20260322-1ubuntu1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_vignettes": [ { "source": "bioqc-efficiency.Rmd", "filename": "bioqc-efficiency.html", "title": "BioQC Algorithm: Speeding up the Wilcoxon-Mann-Whitney Test", "author": "Gregor Sturm and Jitao David Zhang", "engine": "knitr::rmarkdown", "headings": [ "Algorithmic improvements", "Time benchmark", "Conclusion", "R Session Info" ], "created": "2016-11-08 15:23:45", "modified": "2020-12-06 16:35:20", "commits": 7 }, { "source": "bioqc-simulation.Rmd", "filename": "bioqc-simulation.html", "title": "BioQC-benchmark: Testing Efficiency, Sensitivity and Specificity of BioQC on simulated and real-world data", "engine": "knitr::rmarkdown", "headings": [ "Experiment setup", "Sensitivity Benchmark", "Mixing Benchmark", "Dataset selection and quality control", "An example of weighted mixing: heart and jejunum", "Pairwise Mixing", "Conclusions", "Appendix", "Comparing BioQC with Principal Component Analysis (PCA)", "R Session Info" ], "created": "2020-12-06 16:35:20", "modified": "2020-12-06 16:35:20", "commits": 1 }, { "source": "BioQC.Rmd", "filename": "BioQC.html", "title": "BioQC-kidney: The kidney expression example", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Importing the data", "Running BioQC", "Validation with quantitative RT-PCR", "Impact of sample removal on differential gene expression analysis", "R Session Info" ], "created": "2020-12-06 16:35:20", "modified": "2020-12-06 16:35:20", "commits": 1 }, { "source": "bioqc-introduction.Rmd", "filename": "bioqc-introduction.html", "title": "BioQC: Detect tissue heterogeneity in gene expression data", "author": "Jitao David Zhang, Klas Hatje, Gregor Sturm, Clemens Broger, Martin Ebeling, and Laura Badi", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "A dummy example", "Using basic data structures", "Case study with real dataset", "Benchmarking against R implementation", "Technical notes", "Background matters", "Acknowledgement", "R Session Info" ], "created": "2020-12-06 16:35:20", "modified": "2020-12-06 16:35:20", "commits": 1 }, { "source": "bioqc-wmw-test-performance.Rmd", "filename": "bioqc-wmw-test-performance.html", "title": "Comparing the Wilcoxon-Mann-Whitney to alternative statistical tests", "engine": "knitr::rmarkdown", "headings": [ "Computational Performance", "R Session Info", "References" ], "created": "2020-12-06 16:35:20", "modified": "2020-12-06 16:35:20", "commits": 1 }, { "source": "bioqc-signedGenesets.Rmd", "filename": "bioqc-signedGenesets.html", "title": "Using BioQC with signed genesets", "author": "Jitao David Zhang and Gregor Sturm", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "GMT read-in", "Expression object construction", "Match genes", "Perform the analysis", "Conclusions", "Acknowledgement", "R session info" ], "created": "2016-08-29 10:00:41", "modified": "2017-08-02 10:38:55", "commits": 7 } ], "_score": 8.66621836379108, "_indexed": true, "_nocasepkg": "bioqc", "_universes": [ "bioc", "accio" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.41.0", "date": "2026-11-01T13:30:45.000Z", "distro": "resolute", "arch": "aarch64", "commit": "7aa53c346c42a227972b1bbab51e9778551df06d", "fileid": "https://r2.ropensci.org/1258ed765156398aa43d2277968512920764371a43c8877e3d99efc997844c28", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41309441623" }, { "r": "4.7.0", "os": "linux", "version": "1.41.0", "date": "2026-11-01T14:00:59.000Z", "distro": "resolute", "arch": "x86_64", "commit": "7aa53c346c42a227972b1bbab51e9778551df06d", "fileid": "https://r2.ropensci.org/d1b94293992a3bc45182c970658933443029740d5dcc9ddb27b255c9c05ee3a5", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41309441623" }, { "r": "4.6.2", "os": "linux", "version": "1.41.0", "date": "2026-11-01T13:30:42.000Z", "distro": "resolute", "arch": "aarch64", "commit": "7aa53c346c42a227972b1bbab51e9778551df06d", "fileid": "https://r2.ropensci.org/117c660e00b0d3200290b466d43b1306e7af443a5b5ccf09abea7c8a5a702306", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41309441623" }, { "r": "4.6.2", "os": "linux", "version": "1.41.0", "date": "2026-11-01T14:00:31.000Z", "distro": "resolute", "arch": "x86_64", "commit": "7aa53c346c42a227972b1bbab51e9778551df06d", "fileid": "https://r2.ropensci.org/5e6ca827f3c6d38018f678ecd172068ec9dc0721f16cf7907f1618df132cb976", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41309441623" }, { "r": "4.5.3", "os": "mac", "version": "1.41.0", "date": "2026-11-01T15:25:41.000Z", "arch": "aarch64", "commit": "7aa53c346c42a227972b1bbab51e9778551df06d", "fileid": "https://r2.ropensci.org/fc47728dd7aef773f18025d243f3722f98aa3553bb306c9d49d6847bcb9ac7f9", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41309441623" }, { "r": "4.5.3", "os": "mac", "version": "1.41.0", "date": "2026-11-01T15:26:15.000Z", "arch": "x86_64", "commit": "7aa53c346c42a227972b1bbab51e9778551df06d", "fileid": "https://r2.ropensci.org/cd87afe5c164791254e8a64eed90188cb3106822ff2499d6f3e73e569a84144d", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41309441623" }, { "r": "4.6.2", "os": "mac", "version": "1.41.0", "date": "2026-11-01T15:24:54.000Z", "arch": "aarch64", "commit": "7aa53c346c42a227972b1bbab51e9778551df06d", "fileid": "https://r2.ropensci.org/bc3b6f260af70ddf2155606e3f10627703adc415bd8c6f4cd830b9c484e4cc51", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41309441623" }, { "r": "4.6.2", "os": "mac", "version": "1.41.0", "date": "2026-11-01T15:29:11.000Z", "arch": "x86_64", "commit": "7aa53c346c42a227972b1bbab51e9778551df06d", "fileid": "https://r2.ropensci.org/49fd943248f74e7dc2ca62ca8ff477b067b58c8e6a7271216f3fe81e37e7e6c4", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41309441623" }, { "r": "4.7.0", "os": "win", "version": "1.41.0", "date": "2026-11-01T13:29:22.000Z", "arch": "aarch64", "commit": "7aa53c346c42a227972b1bbab51e9778551df06d", "fileid": "https://r2.ropensci.org/36e3264f3dd5784e72d37a046e6047d1ed8336c2ec69911fab7db9f8a9a94661", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41309441623" }, { "r": "4.7.0", "os": "win", "version": "1.41.0", "date": "2026-11-01T13:40:39.000Z", "arch": "x86_64", "commit": "7aa53c346c42a227972b1bbab51e9778551df06d", "fileid": "https://r2.ropensci.org/5d1694d03a4b058c5fec185c52658b936d136050f537085e47ed2183275b9b1a", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41309441623" }, { "r": "4.5.3", "os": "win", "version": "1.41.0", "date": "2026-11-01T13:40:38.000Z", "arch": "x86_64", "commit": "7aa53c346c42a227972b1bbab51e9778551df06d", "fileid": "https://r2.ropensci.org/51c507549cd613fc771d1e32af733aa2c458eab5d1e5092db14f79fce7dd62fb", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41309441623" }, { "r": "4.6.2", "os": "win", "version": "1.41.0", "date": "2026-11-01T13:29:40.000Z", "arch": "aarch64", "commit": "7aa53c346c42a227972b1bbab51e9778551df06d", "fileid": "https://r2.ropensci.org/ab4df95be5ff66b022976dae58145db6f37ac4c767a37c474446c0ccfedeff13", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41309441623" }, { "r": "4.6.2", "os": "win", "version": "1.41.0", "date": "2026-11-01T13:39:19.000Z", "arch": "x86_64", "commit": "7aa53c346c42a227972b1bbab51e9778551df06d", "fileid": "https://r2.ropensci.org/6effd08080eb2c227057a3c3c436bfb2b487256ed1aca71e379e746f0d5cf7fb", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41309441623" } ] }