{ "_id": "6abe4c9799f7aa8c6aa5507c", "Package": "BayesKnockdown", "Title": "BayesKnockdown: Posterior Probabilities for Edges from Knockdown\nData", "Version": "1.39.0", "Date": "2016-06-28", "Author": "William Chad Young", "Maintainer": "William Chad Young ", "Description": "A simple, fast Bayesian method for computing posterior\nprobabilities for relationships between a single predictor\nvariable and multiple potential outcome variables,\nincorporating prior probabilities of relationships. In the\ncontext of knockdown experiments, the predictor variable is the\nknocked-down gene, while the other genes are potential targets.\nCan also be used for differential expression/2-class data.", "License": "GPL-3", "biocViews": "NetworkInference, GeneExpression, GeneTarget, Network,\nBayesian", "LazyData": "true", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:43:58 UTC", "RemoteUrl": "https://github.com/bioc/BayesKnockdown", "RemoteRef": "HEAD", "RemoteSha": "26016f1c383ebcc2d500763d85dc73f519a3b663", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-01 11:47:45 UTC", "User": "root" }, "_user": "bioc", "_type": "src", "_file": "BayesKnockdown_1.39.0.tar.gz", "_fileid": "https://r2.ropensci.org/7c89ca3d65600e191768795f66b70e218d33f80abfb6461b528141263021ba4f", "_filesize": 213209, "_sha256": "7c89ca3d65600e191768795f66b70e218d33f80abfb6461b528141263021ba4f", "_expires": "2027-01-09T12:05:41.000Z", "_created": "2026-10-01T11:47:45.000Z", "_published": "2026-10-01T12:05:43.524Z", "_bioccheck": { "error": 1, "warning": 1, "note": 8 }, "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/36857213284", "_status": "success", "_upstream": "https://github.com/bioc/BayesKnockdown", "_commit": { "id": "26016f1c383ebcc2d500763d85dc73f519a3b663", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777380238 }, "_maintainer": { "name": "William Chad Young", "email": "wmchad@uw.edu" }, "_distro": "resolute", "_jobs": [ { "job": 110353825841, "time": 147, "config": "bioc-checks", "r": "4.6.1", "check": "ERROR", "artifact": "11159340869" }, { "job": 110353825788, "time": 223, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11160295621" }, { "job": 110353825807, "time": 295, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11159791244" }, { "job": 110353825794, "time": 138, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11160771649" }, { "job": 110353825694, "time": 161, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11161600488" }, { "job": 110352638338, "time": 209, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11159450354" }, { "job": 110353825777, "time": 94, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11160190322" }, { "job": 110353825721, "time": 75, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11160265267" }, { "job": 110353825961, "time": 73, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11160165361" }, { "job": 110353825806, "time": 73, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11159920335" } ], "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.3", "role": "Depends" }, { "package": "stats", "role": "Imports" }, { "package": "Biobase", "role": "Imports" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.39.0", "bioc": "3.24" }, { "branch": "release", "version": "1.38.0", "bioc": "3.23" } ], "_topics": [ "networkinference", "geneexpression", "genetarget", "network", "bayesian" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 471, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 459, "source": "https://www.bioconductor.org/packages/stats/bioc/BayesKnockdown" }, "_searchresults": 3, "_rbuild": "4.6.1", "_assets": [ "extra/BayesKnockdown.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "BayesKnockdown", "BayesKnockdown.diffExp", "BayesKnockdown.es" ], "_datasets": [ { "name": "lincs.kd", "title": "LINCS L1000 Knockdown Example Dataset", "object": "lincs.kd", "class": [ "matrix", "array" ], "fields": [], "rows": 21, "table": true, "tojson": true } ], "_help": [ { "page": "BayesKnockdown", "title": "Posterior Probabilities for Knockdown Data", "topics": [ "BayesKnockdown" ] }, { "page": "BayesKnockdown.diffExp", "title": "Posterior Probabilities for 2-class Data", "topics": [ "BayesKnockdown.diffExp" ] }, { "page": "BayesKnockdown.es", "title": "Posterior Probabilities for ExpressionSet Data", "topics": [ "BayesKnockdown.es" ] }, { "page": "lincs.kd", "title": "LINCS L1000 Knockdown Example Dataset", "topics": [ "lincs.kd" ] } ], "_rundeps": [ "Biobase", "BiocGenerics", "generics" ], "_vignettes": [ { "source": "BayesKnockdown.rnw", "filename": "BayesKnockdown.pdf", "title": "networkBMA", "engine": "utils::Sweave", "headings": [ "Posterior Probabilities", "2-Class Data", "Acknowledgements" ], "created": "2016-07-22 20:40:07", "modified": "2016-07-22 20:40:07", "commits": 1 } ], "_score": 3.3010299956639813, "_indexed": true, "_nocasepkg": "bayesknockdown", "_universes": [ "bioc" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.39.0", "date": "2026-10-01T11:51:30.000Z", "distro": "resolute", "commit": "26016f1c383ebcc2d500763d85dc73f519a3b663", "fileid": "https://r2.ropensci.org/69ab8a4e3d1777f09d4902c091612fe59902370092b23b6431c8895a2e683ca5", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/36857213284" }, { "r": "4.6.1", "os": "linux", "version": "1.39.0", "date": "2026-10-01T11:52:47.000Z", "distro": "resolute", "commit": "26016f1c383ebcc2d500763d85dc73f519a3b663", "fileid": "https://r2.ropensci.org/7e7faf4ef62f587286076a6ddd9228c1df3839c33601e35fb6ea71efd7947180", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/36857213284" }, { "r": "4.5.3", "os": "mac", "version": "1.39.0", "date": "2026-10-01T12:04:52.000Z", "commit": "26016f1c383ebcc2d500763d85dc73f519a3b663", "fileid": "https://r2.ropensci.org/315a98f345a53cbc2f26def7aedccfdd90e0a834f3f98992d9b9c9408b82e5cb", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/36857213284" }, { "r": "4.6.1", "os": "mac", "version": "1.39.0", "date": "2026-10-01T12:05:14.000Z", "commit": "26016f1c383ebcc2d500763d85dc73f519a3b663", "fileid": "https://r2.ropensci.org/527efe2a389f741d1f3e1a7c8ec2241472b0bd6ad0447ddabc2f818293c88dc9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/36857213284" }, { "r": "4.6.0", "os": "wasm", "version": "1.39.0", "date": "2026-10-01T11:49:37.000Z", "commit": "26016f1c383ebcc2d500763d85dc73f519a3b663", "fileid": "https://r2.ropensci.org/ed24c99b466ce8f33cc13e39892822f3770aa7658886850aecf74fad5db5c421", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/36857213284" }, { "r": "4.7.0", "os": "win", "version": "1.39.0", "date": "2026-10-01T11:48:58.000Z", "commit": "26016f1c383ebcc2d500763d85dc73f519a3b663", "fileid": "https://r2.ropensci.org/5d14c6a078e10fd8a2fe09bed88e5f807d8b7359e269cd495a950e06f3aaf299", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/36857213284" }, { "r": "4.5.3", "os": "win", "version": "1.39.0", "date": "2026-10-01T11:48:48.000Z", "commit": "26016f1c383ebcc2d500763d85dc73f519a3b663", "fileid": "https://r2.ropensci.org/e811ae67b35d658c8c331a270dae265b72c955664b1b2ac6d7fdd0afab5f735a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/36857213284" }, { "r": "4.6.1", "os": "win", "version": "1.39.0", "date": "2026-10-01T11:48:55.000Z", "commit": "26016f1c383ebcc2d500763d85dc73f519a3b663", "fileid": "https://r2.ropensci.org/be982afad279de3c2d95b1ad67ce7cbce500ba47df616af0ee4950b6a1b48a23", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/36857213284" } ] }