{
  "_id": "6a494c5bf6c47c44194995a9",
  "Package": "BayesKnockdown",
  "Title": "BayesKnockdown: Posterior Probabilities for Edges from Knockdown\nData",
  "Version": "1.39.0",
  "Date": "2016-06-28",
  "Author": "William Chad Young",
  "Maintainer": "William Chad Young <wmchad@uw.edu>",
  "Description": "A simple, fast Bayesian method for computing posterior\nprobabilities for relationships between a single predictor\nvariable and multiple potential outcome variables,\nincorporating prior probabilities of relationships. In the\ncontext of knockdown experiments, the predictor variable is the\nknocked-down gene, while the other genes are potential targets.\nCan also be used for differential expression/2-class data.",
  "License": "GPL-3",
  "biocViews": "NetworkInference, GeneExpression, GeneTarget, Network,\nBayesian",
  "LazyData": "true",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:43:58 UTC",
  "RemoteUrl": "https://github.com/bioc/BayesKnockdown",
  "RemoteRef": "HEAD",
  "RemoteSha": "26016f1c383ebcc2d500763d85dc73f519a3b663",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-03 19:40:48 UTC",
    "User": "root"
  },
  "_user": "bioc",
  "_type": "src",
  "_file": "BayesKnockdown_1.39.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/16d5b43f730cb7bbd1d41692c9a689dd902ef30dfa40abb55a4e8fdc36c046d7",
  "_filesize": 213286,
  "_sha256": "16d5b43f730cb7bbd1d41692c9a689dd902ef30dfa40abb55a4e8fdc36c046d7",
  "_expires": "2026-10-12T18:09:30.000Z",
  "_created": "2026-07-03T19:40:48.000Z",
  "_published": "2026-07-04T18:09:31.836Z",
  "_bioccheck": {
    "error": 1,
    "warning": 1,
    "note": 8
  },
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/28680206687",
  "_status": "success",
  "_upstream": "https://github.com/bioc/BayesKnockdown",
  "_commit": {
    "id": "26016f1c383ebcc2d500763d85dc73f519a3b663",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777380238
  },
  "_maintainer": {
    "name": "William Chad Young",
    "email": "wmchad@uw.edu"
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 85155035008,
      "time": 142,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "8073814985"
    },
    {
      "job": 85155035073,
      "time": 219,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8073829236"
    },
    {
      "job": 85155035134,
      "time": 158,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8073817935"
    },
    {
      "job": 85155035107,
      "time": 71,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8073800663"
    },
    {
      "job": 85155035003,
      "time": 90,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8073804685"
    },
    {
      "job": 85155034961,
      "time": 143,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8073786319"
    },
    {
      "job": 85155035078,
      "time": 106,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8073807988"
    },
    {
      "job": 85155035007,
      "time": 70,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8073800414"
    },
    {
      "job": 85155035135,
      "time": 78,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8073802173"
    },
    {
      "job": 85155034929,
      "time": 59,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8073798295"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.3",
      "role": "Depends"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "Biobase",
      "role": "Imports"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.39.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.38.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "networkinference",
    "geneexpression",
    "genetarget",
    "network",
    "bayesian"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 445,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_searchresults": 1,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/BayesKnockdown.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "BayesKnockdown",
    "BayesKnockdown.diffExp",
    "BayesKnockdown.es"
  ],
  "_datasets": [
    {
      "name": "lincs.kd",
      "title": "LINCS L1000 Knockdown Example Dataset",
      "object": "lincs.kd",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [],
      "rows": 21,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "BayesKnockdown",
      "title": "Posterior Probabilities for Knockdown Data",
      "topics": [
        "BayesKnockdown"
      ]
    },
    {
      "page": "BayesKnockdown.diffExp",
      "title": "Posterior Probabilities for 2-class Data",
      "topics": [
        "BayesKnockdown.diffExp"
      ]
    },
    {
      "page": "BayesKnockdown.es",
      "title": "Posterior Probabilities for ExpressionSet Data",
      "topics": [
        "BayesKnockdown.es"
      ]
    },
    {
      "page": "lincs.kd",
      "title": "LINCS L1000 Knockdown Example Dataset",
      "topics": [
        "lincs.kd"
      ]
    }
  ],
  "_rundeps": [
    "Biobase",
    "BiocGenerics",
    "generics"
  ],
  "_vignettes": [
    {
      "source": "BayesKnockdown.rnw",
      "filename": "BayesKnockdown.pdf",
      "title": "networkBMA",
      "engine": "utils::Sweave",
      "headings": [
        "Posterior Probabilities",
        "2-Class Data",
        "Acknowledgements"
      ],
      "created": "2016-07-22 20:40:07",
      "modified": "2016-07-22 20:40:07",
      "commits": 1
    }
  ],
  "_score": 3.3010299956639813,
  "_indexed": true,
  "_nocasepkg": "bayesknockdown",
  "_universes": [
    "bioc"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.39.0",
      "date": "2026-07-03T19:44:35.000Z",
      "distro": "resolute",
      "commit": "26016f1c383ebcc2d500763d85dc73f519a3b663",
      "fileid": "https://r2.ropensci.org/749e79a7d079587bc2c1513d9ea04dff9437442312d548fe4344a68dc1979482",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28680206687"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.39.0",
      "date": "2026-07-03T19:43:30.000Z",
      "distro": "resolute",
      "commit": "26016f1c383ebcc2d500763d85dc73f519a3b663",
      "fileid": "https://r2.ropensci.org/1c64dc2f4c53b64254f0b8cf73a032f3b4f5691571f1d854cc3961e6dbe46bf9",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28680206687"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.39.0",
      "date": "2026-07-03T19:42:08.000Z",
      "commit": "26016f1c383ebcc2d500763d85dc73f519a3b663",
      "fileid": "https://r2.ropensci.org/1cdee7cb75120725428d618b4df3715a6f2dfef6e2e59dc51dc10caf09419be0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28680206687"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.39.0",
      "date": "2026-07-03T19:42:25.000Z",
      "commit": "26016f1c383ebcc2d500763d85dc73f519a3b663",
      "fileid": "https://r2.ropensci.org/c89356b0e73451e7bfcc1932c3bb883812a2b8542799d595907c4d1d09c0809c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28680206687"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.39.0",
      "date": "2026-07-03T19:42:52.000Z",
      "commit": "26016f1c383ebcc2d500763d85dc73f519a3b663",
      "fileid": "https://r2.ropensci.org/004a9275bd82bee654c3e41d2848e49f7db4afa523bf57759f231f073aa06a5b",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28680206687"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.39.0",
      "date": "2026-07-03T19:41:57.000Z",
      "commit": "26016f1c383ebcc2d500763d85dc73f519a3b663",
      "fileid": "https://r2.ropensci.org/371738185cf85dfc7bf6e718cd1321dfa1f1b710494666b7a0d158887a6a6f2a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28680206687"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.39.0",
      "date": "2026-07-03T19:42:07.000Z",
      "commit": "26016f1c383ebcc2d500763d85dc73f519a3b663",
      "fileid": "https://r2.ropensci.org/62e96073beeb996893ea39af2f37f98bcaf407b313ee551ec06295d54d983791",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28680206687"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.39.0",
      "date": "2026-07-03T19:41:49.000Z",
      "commit": "26016f1c383ebcc2d500763d85dc73f519a3b663",
      "fileid": "https://r2.ropensci.org/e8c0d0df4601f3ee9451fcb49a7ef14e85b4f72fbc32f2a9d8dd7eb0d102973f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28680206687"
    }
  ]
}