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    "getBatchesBySeqnameFromOnDiskLongTable",
    "getBatchesFromOnDiskLongTable",
    "getBatchesFromOnDiskLongTable_old",
    "getBSgenome",
    "getRowsByIdFromOnDiskLongTable",
    "getRowsByIndexFromOnDiskLongTable_old",
    "getRowsFromOnDiskLongTable",
    "getSeq",
    "granges",
    "hasOnlyBaseLetters",
    "inferRefAndAltAlleles",
    "injectSNPs",
    "installed.genomes",
    "installed.SNPs",
    "letterFrequency",
    "MaskedBSgenome",
    "masknames",
    "matchPWM",
    "mseqnames",
    "nchar",
    "newSNPlocs",
    "newXtraSNPlocs",
    "nucleotideFrequencyAt",
    "oligonucleotideFrequency",
    "OnDiskLongTable",
    "OnDiskLongTable_old",
    "organism",
    "provider",
    "providerVersion",
    "ranges",
    "referenceGenome",
    "releaseDate",
    "releaseName",
    "saveAsOnDiskLongTable_old",
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    "score",
    "seqinfo",
    "seqinfo<-",
    "seqnames",
    "seqnames<-",
    "seqtype",
    "show",
    "snpcount",
    "snplocs",
    "SNPlocs_pkgname",
    "snpsById",
    "snpsByOverlaps",
    "snpsBySeqname",
    "sourceUrl",
    "spatialIndex",
    "start",
    "strand",
    "subject",
    "uniqueLetters",
    "vcountPattern",
    "Views",
    "vmatchPattern",
    "width",
    "writeBSgenomeToFasta",
    "writeBSgenomeToTwobit",
    "writeOnDiskLongTable",
    "writeOnDiskLongTableRowids"
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      "title": "Find available/installed genomes",
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        "getBSgenome",
        "installed.genomes"
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      "title": "bsapply",
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    {
      "page": "BSgenome-class",
      "title": "BSgenome objects",
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        "as.list,BSgenome-method",
        "BSgenome",
        "BSgenome-class",
        "bsgenomeName,BSgenome-method",
        "class:BSgenome",
        "coerce,BSgenome,GenomeDescription-method",
        "commonName,BSgenome-method",
        "length,BSgenome-method",
        "masknames",
        "masknames,BSgenome-method",
        "masknames,MaskedBSgenome-method",
        "mseqnames",
        "mseqnames,BSgenome-method",
        "names,BSgenome-method",
        "organism,BSgenome-method",
        "provider,BSgenome-method",
        "providerVersion,BSgenome-method",
        "releaseDate,BSgenome-method",
        "seqinfo,BSgenome-method",
        "seqinfo<-,BSgenome-method",
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        "show,BSgenome-method",
        "sourceUrl",
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        "[[,BSgenome-method"
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        "countPWM,BSgenome-method",
        "matchPWM,BSgenome-method",
        "vcountPattern,BSgenome-method",
        "vcountPDict,BSgenome-method",
        "vmatchPattern,BSgenome-method",
        "vmatchPDict,BSgenome-method"
      ]
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      "title": "BSgenomeViews objects",
      "topics": [
        "alphabetFrequency,BSgenomeViews-method",
        "as.character,BSgenomeViews-method",
        "as.data.frame,BSgenomeViews-method",
        "BSgenomeViews",
        "BSgenomeViews-class",
        "class:BSgenomeViews",
        "coerce,BSgenomeViews,DNAStringSet-method",
        "coerce,BSgenomeViews,XStringSet-method",
        "consensusMatrix,BSgenomeViews-method",
        "consensusString,BSgenomeViews-method",
        "elementNROWS,BSgenomeViews-method",
        "end,BSgenomeViews-method",
        "extractROWS,BSgenomeViews-method",
        "getListElement,BSgenomeViews-method",
        "granges,BSgenomeViews-method",
        "hasOnlyBaseLetters,BSgenomeViews-method",
        "length,BSgenomeViews-method",
        "letterFrequency,BSgenomeViews-method",
        "names,BSgenomeViews-method",
        "nchar,BSgenomeViews-method",
        "nucleotideFrequencyAt,BSgenomeViews-method",
        "oligonucleotideFrequency,BSgenomeViews-method",
        "ranges,BSgenomeViews-method",
        "seqinfo,BSgenomeViews-method",
        "seqnames,BSgenomeViews-method",
        "seqtype,BSgenomeViews-method",
        "show,BSgenomeViews-method",
        "start,BSgenomeViews-method",
        "strand,BSgenomeViews-method",
        "subject,BSgenomeViews-method",
        "uniqueLetters,BSgenomeViews-method",
        "unlist,BSgenomeViews-method",
        "Views,BSgenome-method",
        "width,BSgenomeViews-method"
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    },
    {
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      "title": "Class \"BSParams\"",
      "topics": [
        "BSParams",
        "BSParams-class",
        "class:BSParams"
      ]
    },
    {
      "page": "export-methods",
      "title": "Export a BSgenome object as a FASTA or twoBit file",
      "topics": [
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        "export,BSgenome,TwoBitFile,ANY-method",
        "export-methods",
        "writeBSgenomeToFasta",
        "writeBSgenomeToTwobit"
      ]
    },
    {
      "page": "getSeq-methods",
      "title": "getSeq methods for BSgenome and XStringSet objects",
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        "getSeq,BSgenome-method",
        "getSeq,XStringSet-method",
        "[,XStringSet,GenomicRanges-method",
        "[,XStringSet,GRangesList-method"
      ]
    },
    {
      "page": "injectSNPs",
      "title": "SNP injection",
      "topics": [
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        "class:InjectSNPsHandler",
        "injectSNPs",
        "injectSNPs,BSgenome-method",
        "InjectSNPsHandler",
        "InjectSNPsHandler-class",
        "installed.SNPs",
        "snpcount,BSgenome-method",
        "snpcount,InjectSNPsHandler-method",
        "snplocs,BSgenome-method",
        "snplocs,InjectSNPsHandler-method",
        "SNPlocs_pkgname",
        "SNPlocs_pkgname,BSgenome-method",
        "SNPlocs_pkgname,InjectSNPsHandler-method"
      ]
    },
    {
      "page": "SNPlocs-class",
      "title": "SNPlocs objects",
      "topics": [
        "class:ODLT_SNPlocs",
        "class:OldFashionSNPlocs",
        "class:SNPlocs",
        "commonName,SNPlocs-method",
        "compatibleGenomes",
        "compatibleGenomes,SNPlocs-method",
        "inferRefAndAltAlleles",
        "newSNPlocs",
        "new_ODLT_SNPlocs",
        "ODLT_SNPlocs",
        "ODLT_SNPlocs-class",
        "OldFashionSNPlocs",
        "OldFashionSNPlocs-class",
        "organism,SNPlocs-method",
        "provider,SNPlocs-method",
        "providerVersion,SNPlocs-method",
        "referenceGenome",
        "referenceGenome,SNPlocs-method",
        "releaseDate,SNPlocs-method",
        "releaseName",
        "releaseName,SNPlocs-method",
        "seqinfo,SNPlocs-method",
        "seqnames,SNPlocs-method",
        "show,SNPlocs-method",
        "snpcount",
        "snpcount,ODLT_SNPlocs-method",
        "snpcount,OldFashionSNPlocs-method",
        "snpcount,SNPlocs-method",
        "SNPlocs",
        "snplocs",
        "snplocs,ODLT_SNPlocs-method",
        "snplocs,OldFashionSNPlocs-method",
        "snplocs,SNPlocs-method",
        "SNPlocs-class",
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