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"ProbeAnnDbMap", "ProbeAnnDbMap-class", "ProbeGo3AnnDbBimap", "ProbeGo3AnnDbBimap-class", "ProbeIpiAnnDbMap", "ProbeIpiAnnDbMap-class", "show,AnnDbBimap-method", "show,FlatBimap-method", "summary,AnnDbBimap-method", "summary,Bimap-method" ] }, { "page": "Bimap-direction", "title": "Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys", "topics": [ "Bimap-direction", "count.mappedLkeys", "count.mappedLkeys,AgiAnnDbMap-method", "count.mappedLkeys,AnnDbBimap-method", "count.mappedLkeys,Bimap-method", "count.mappedLkeys,Go3AnnDbBimap-method", "count.mappedRkeys", "count.mappedRkeys,AnnDbBimap-method", "count.mappedRkeys,AnnDbMap-method", "count.mappedRkeys,Bimap-method", "count.mappedRkeys,Go3AnnDbBimap-method", "direction", "direction,AnnDbBimap-method", "direction,FlatBimap-method", "direction<-", "direction<-,AnnDbBimap-method", "direction<-,AnnDbMap-method", "direction<-,FlatBimap-method", "Lkeys", "Lkeys,AnnDbBimap-method", "Lkeys,FlatBimap-method", "Lkeys,ProbeAnnDbBimap-method", "Lkeys,ProbeAnnDbMap-method", "Lkeys,ProbeGo3AnnDbBimap-method", "Lkeys,ProbeIpiAnnDbMap-method", "Lkeys<-", "Lkeys<-,AnnDbBimap-method", "Lkeys<-,FlatBimap-method", "Llength", "Llength,AnnDbBimap-method", "Llength,Bimap-method", "Llength,ProbeAnnDbBimap-method", "Llength,ProbeAnnDbMap-method", "Llength,ProbeGo3AnnDbBimap-method", "Llength,ProbeIpiAnnDbMap-method", "mappedLkeys", "mappedLkeys,AgiAnnDbMap-method", "mappedLkeys,AnnDbBimap-method", "mappedLkeys,FlatBimap-method", "mappedLkeys,Go3AnnDbBimap-method", "mappedRkeys", "mappedRkeys,AnnDbBimap-method", "mappedRkeys,AnnDbMap-method", "mappedRkeys,FlatBimap-method", "mappedRkeys,Go3AnnDbBimap-method", "revmap", "revmap,AnnDbBimap-method", "revmap,Bimap-method", "revmap,environment-method", "revmap,list-method", "Rkeys", "Rkeys,AnnDbBimap-method", "Rkeys,AnnDbMap-method", "Rkeys,FlatBimap-method", "Rkeys,Go3AnnDbBimap-method", "Rkeys<-", "Rkeys<-,AnnDbBimap-method", "Rkeys<-,FlatBimap-method", "Rlength", "Rlength,AnnDbBimap-method", "Rlength,AnnDbMap-method", "Rlength,Bimap-method", "Rlength,Go3AnnDbBimap-method", "subset,AnnDbBimap-method", "subset,Bimap-method" ] }, { "page": "Bimap-envirAPI", "title": "Environment-like API for Bimap objects", "topics": [ "$,Bimap-method", "Bimap-envirAPI", "contents,Bimap-method", "eapply", "eapply,Bimap-method", "exists", "exists,ANY,ANY,Bimap-method", "exists,ANY,Bimap,missing-method", "get", "get,ANY,ANY,Bimap-method", "get,ANY,Bimap,missing-method", "ls", "ls,Bimap-method", "mget", "mget,ANY,Bimap-method", "mget,Bimap-method", "sample", "sample,Bimap-method", "sample,environment-method", "[[,Bimap-method" ] }, { "page": "Bimap-keys", "title": "Methods for manipulating the keys of a Bimap object", "topics": [ "Bimap-keys", "count.mappedkeys", "count.mappedkeys,ANY-method", "count.mappedkeys,Bimap-method", "isNA", "isNA,ANY-method", "isNA,Bimap-method", "isNA,environment-method", "keys,Bimap-method", "keys<-", "keys<-,Bimap-method", "length,Bimap-method", "mappedkeys", "mappedkeys,Bimap-method", "mappedkeys,environment-method", "mappedkeys,vector-method", "show,AnnDbTable-method", "[,Bimap-method" ] }, { "page": "Bimap-toTable", "title": "Methods for manipulating a Bimap object in a data-frame style", "topics": [ "as.data.frame,Bimap-method", "as.data.frame.Bimap", "Bimap-toTable", "colmetanames", "colmetanames,AnnDbBimap-method", "colmetanames,FlatBimap-method", "colnames", "colnames,AnnDbBimap-method", "colnames,FlatBimap-method", "count.links", "count.links,Bimap-method", "count.links,Go3AnnDbBimap-method", "dim,Bimap-method", "head,FlatBimap-method", "keyname", "keyname,Bimap-method", "links", "links,AnnDbBimap-method", "links,Bimap-method", "links,FlatBimap-method", "links,Go3AnnDbBimap-method", "Lkeyname", "Lkeyname,AnnDbBimap-method", "Lkeyname,Bimap-method", "ncol", "ncol,Bimap-method", "nhit", "nhit,Bimap-method", "nhit,environment-method", "nhit,list-method", "nrow", "nrow,AnnDbBimap-method", "nrow,AnnDbTable-method", "nrow,Bimap-method", "nrow,FlatBimap-method", "nrow,Go3AnnDbBimap-method", "Rattribnames", "Rattribnames,AnnDbBimap-method", "Rattribnames,Bimap-method", "Rattribnames<-", "Rattribnames<-,AnnDbBimap-method", "Rattribnames<-,FlatBimap-method", "Rattribnames<-,Go3AnnDbBimap-method", "Rkeyname", "Rkeyname,AnnDbBimap-method", "Rkeyname,Bimap-method", "tagname", "tagname,AnnDbBimap-method", "tagname,Bimap-method", "tail,FlatBimap-method", "toTable", "toTable,Bimap-method", "toTable,FlatBimap-method" ] }, { "page": "BimapFormatting", "title": "Formatting a Bimap as a list or character vector", "topics": [ "as.character,AnnDbBimap-method", "as.character,FlatBimap-method", "as.list", "as.list,AgiAnnDbMap-method", "as.list,Bimap-method", "as.list,FlatBimap-method", "as.list,GoAnnDbBimap-method", "as.list,GOTermsAnnDbBimap-method", "as.list,IpiAnnDbMap-method", "as.list.Bimap", "BimapFormatting" ] }, { "page": "createSimpleBimap", "title": "Creates a simple Bimap from a SQLite database in an situation that is external to AnnotationDbi", "topics": [ "createSimpleBimap" ] }, { "page": "GOFrame", "title": "GOFrame and GOAllFrame objects", "topics": [ "class:GOAllFrame", "class:GOFrame", "getGOFrameData", "getGOFrameData,GOAllFrame-method", "getGOFrameData,GOFrame-method", "GOAllFrame", "GOAllFrame,GOFrame-method", "GOAllFrame-class", "GOFrame", "GOFrame,data.frame,character-method", "GOFrame,data.frame,missing-method", "GOFrame-class" ] }, { "page": "GOColsAndKeytypes", "title": "Descriptions of available values for 'columns' and 'keytypes' for GO.db.", "topics": [ "DEFINITION", "GOID", "ONTOLOGY", "TERM" ] }, { "page": "GOTerms-class", "title": "Class \"GOTerms\"", "topics": [ "class:GOTerms", "Definition", "Definition,character-method", "Definition,GOTerms-method", "Definition,GOTermsAnnDbBimap-method", "GOID,character-method", "GOID,GOTerms-method", "GOID,GOTermsAnnDbBimap-method", "GOTerms", "GOTerms-class", "initialize,GOTerms-method", "Ontology", "Ontology,character-method", "Ontology,GOTerms-method", "Ontology,GOTermsAnnDbBimap-method", "Secondary", "Secondary,character-method", "Secondary,GOTerms-method", "Secondary,GOTermsAnnDbBimap-method", "show,GOTerms-method", "Synonym", "Synonym,character-method", "Synonym,GOTerms-method", "Synonym,GOTermsAnnDbBimap-method", "Term", "Term,character-method", "Term,GOTerms-method", "Term,GOTermsAnnDbBimap-method" ] }, { "page": "inpIDMapper", "title": "Convenience functions for mapping IDs through an appropriate set of annotation packages", "topics": [ "idConverter", "inpIDMapper", "intraIDMapper" ] }, { "page": "KEGGFrame", "title": "KEGGFrame objects", "topics": [ "class:KEGGFrame", "getKEGGFrameData", "getKEGGFrameData,KEGGAllFrame-method", "getKEGGFrameData,KEGGFrame-method", "KEGGFrame", "KEGGFrame,data.frame,character-method", "KEGGFrame,data.frame,missing-method", "KEGGFrame-class" ] }, { "page": "make_eg_to_go_map", "title": "Create GO to Entrez Gene maps for chip-based packages", "topics": [ "make_eg_to_go_map", "make_go_to_eg_map" ] }, { "page": "makeGOGraph", "title": "A convenience function to generate graphs based on the GO.db package", "topics": [ "makeGOGraph" ] }, { "page": "organismKEGGFrame", "title": "A data frame that maps species names to KEGG organisms", "topics": [ "genomeKEGGFrame", "organismKEGGFrame" ] }, { "page": "orgPackageName", "title": "Org package contained in annotation object", "topics": [ "orgPackageName" ] }, { "page": "print.probetable", "title": "Print method for probetable objects", "topics": [ "print.probetable" ] }, { "page": "BimapFiltering", "title": "Methods for getting/setting the filters on a Bimap object", "topics": [ "getBimapFilters", "getBimapFilters,AnnDbBimap-method", "hasMultiProbes", "hasMultiProbes,ProbeAnnDbBimap-method", "hasMultiProbes,ProbeAnnDbMap-method", "hasMultiProbes,ProbeGo3AnnDbBimap-method", "hasMultiProbes,ProbeIpiAnnDbMap-method", "hasSingleProbes", "hasSingleProbes,ProbeAnnDbBimap-method", "hasSingleProbes,ProbeAnnDbMap-method", "hasSingleProbes,ProbeGo3AnnDbBimap-method", "hasSingleProbes,ProbeIpiAnnDbMap-method", "toggleProbes", "toggleProbes,ProbeAnnDbBimap-method", "toggleProbes,ProbeAnnDbMap-method", "toggleProbes,ProbeGo3AnnDbBimap-method", "toggleProbes,ProbeIpiAnnDbMap-method" ] }, { "page": "toSQLStringSet", "title": "Convert a vector to a quoted string for use as a SQL value list", "topics": [ "toSQLStringSet" ] }, { "page": "unlist2", "title": "A replacement for unlist() that does not mangle the names", "topics": [ "unlist2" ] } ], "_readme": "https://github.com/bioc/AnnotationDbi/raw/HEAD/README.md", "_rundeps": [ "askpass", "Biobase", "BiocBaseUtils", "BiocGenerics", "Biostrings", "bit", "bit64", "blob", "cachem", "cli", "cpp11", "crayon", "curl", "DBI", "fastmap", "generics", "glue", "httr", "IRanges", "jsonlite", "KEGGREST", "lifecycle", "memoise", "mime", "openssl", "pkgconfig", "png", "R6", "rlang", "RSQLite", "S4Vectors", "Seqinfo", "sys", "vctrs", "XVector" ], "_vignettes": [ { "source": "IntroToAnnotationPackages.Rnw", "filename": "IntroToAnnotationPackages.pdf", "title": "Introduction To Bioconductor Annotation Packages ", "engine": "knitr::knitr", "headings": [ "1 AnnotationDb objects and the select method", "2 ChipDb objects and the select method", "3 OrgDb objects and the select method", "4 Using select with GO.db", "5 Using select with TxDb packages", "6 Using select with EnsDb packages" ], "created": "2013-10-22 23:20:32", "modified": "2021-01-29 16:24:36", "commits": 11 } ], "_score": 15.76014832060541, "_indexed": true, "_nocasepkg": "annotationdbi", "_universes": [ "bioc", "bioconductor-bot", "bioconductor" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.75.2", "date": "2026-11-01T13:02:48.000Z", "distro": "resolute", "commit": "00bc715f3ecc0d78d7794257c041d3d463766e11", "fileid": 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