{ "_id": "6aca1975fe5cc25786e84acc", "Package": "AnnotatedBCGEData", "Title": "100+ Curated Breast Cancer Gene Expression Data sets", "Version": "0.99.11", "Date": "2025-10-16", "Authors@R": "c(person(\"Heidi\", \"Steadman\",\nemail = \"hstead05@byu.edu\",\nrole = \"aut\"),\nperson(\"Shu-Fei\", \"Lo\",\nemail = \"shufeilo@byu.edu\",\nrole = \"aut\"),\nperson(\"Stephen\", \"Piccolo\",\nemail = \"stephen_piccolo@byu.edu\",\nrole = \"cre\",\ncomment = c(ORCID = \"0000-0003-2001-5640\")),\nperson(\"BYU\", \"College Undergraduate Research Award\",\nrole = \"fnd\")\n)", "Description": "AnnotatedBCGEData is an R Bioconductor package that\nprovides access to more than 100 gene-expression datasets\ngenerated using microarray and RNA- sequencing technologies. We\ncollected these datsets from public repositories, including\nGene Expression Omnibus, ArrayExpress, and The Cancer Genome\nAtlas. Where feasible, we obtained and reprocessed the raw data\nusing computational pipelines and annotations that were\nstandardized and more updated than those used to process the\ndata originally. Additionally, we annotated the sample metadata\nusing oncology terms from the National Cancer Institute\nThesaurus. This was necessary because different data submitters\nused different terminology to describe breast-cancer patients\nand samples. Mapping the metadata to ontology terms makes it\npossible for users to search the data using these standardized\nterms.", "License": "CC0", "URL": "https://github.com/srp33/AnnotatedBCGEData", "BugReports": "https://github.com/srp33/AnnotatedBCGEData//issues", "biocViews": "ExperimentData, CancerData, ExpressionData,\nHomo_sapiens_Data, GEO, ArrayExpress, Tissue, MicroarrayData,\nSequencingData, BreastCancerData, Genome, TissueMicroarrayData", "Encoding": "UTF-8", "Roxygen": "list(markdown=TRUE)", "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "Config/roxygen2/version": "8.1.0", "Config/pak/sysreqs": "libicu-dev libsecret-1-dev libxml2-dev libssl-dev\nlibx11-dev zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-09-11 23:41:44 UTC", "RemoteUrl": "https://github.com/bioc/AnnotatedBCGEData", "RemoteRef": "HEAD", "RemoteSha": "72c4a55e4a7bbe674fcbc93ca900c1806fd4469a", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-10 10:46:52 UTC", "User": "root" }, "Author": "Heidi Steadman [aut],\nShu-Fei Lo [aut],\nStephen Piccolo [cre] (ORCID: ),\nBYU College Undergraduate Research Award [fnd]", "Maintainer": "Stephen Piccolo ", "_user": "bioc", "_type": "src", "_file": "AnnotatedBCGEData_0.99.11.tar.gz", "_fileid": "https://r2.ropensci.org/5007c19fbda98044c860870fb201d674aefcea28c51cd2a7edcb90e355214821", "_filesize": 195808, "_sha256": "5007c19fbda98044c860870fb201d674aefcea28c51cd2a7edcb90e355214821", "_expires": "2027-01-18T10:54:43.000Z", "_created": "2026-10-10T10:46:52.000Z", "_published": "2026-10-10T10:54:44.973Z", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/38045847036", "_status": "failure", "_host": "GitHub-Actions", "_bioccheck": { "error": 0, "warning": 0, "note": 4 }, "_upstream": "https://github.com/bioc/AnnotatedBCGEData", "_commit": { "id": "72c4a55e4a7bbe674fcbc93ca900c1806fd4469a", "author": "Heidi ", "committer": "Heidi ", "message": "updated R version dependency, improved helper code 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