{ "_id": "6aca1b12fe5cc25786e84b48", "Package": "AWAggregatorData", "Type": "Package", "Title": "Attribute-Weighted Aggregation Data", "Version": "1.3.0", "Authors@R": "c(\nperson(given = \"Jiahua\",\nfamily = \"Tan\",\nemail = \"jiahuatan@chem.ubc.ca\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0001-5839-1049\")\n),\nperson(given = \"Gian L.\",\nfamily = \"Negri\",\nemail = \"gnegri@bcgsc.ca\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0001-7722-8888\")\n),\nperson(given = \"Gregg B.\",\nfamily = \"Morin\",\nemail = \"gmorin@bcgsc.ca\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0001-8949-4374\")\n),\nperson(given = \"David D. Y.\",\nfamily = \"Chen\",\nemail = \"chen@chem.ubc.ca\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0002-3669-6041\")\n)\n)", "Description": "The AWAggregatorData package contains the data associated\nwith the AWAggregator R package. It includes two pre-trained\nrandom forest models, one incorporating the average coefficient\nof variation as a feature, and the other one not including it.\nIt also contains the PSMs in Benchmark Set 1~3 derived from the\npsm.tsv output files generated by FragPipe, which are used to\ntrain the random forest models.", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "biocViews": "ExperimentData, PackageTypeData, ExperimentHub,\nMassSpectrometryData, Proteome", "BugReports": "https://github.com/Tan-Jiahua/AWAggregatorData/issues", "URL": "https://github.com/Tan-Jiahua/AWAggregatorData", "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "RoxygenNote": "7.3.2", "Config/pak/sysreqs": "libicu-dev libpng-dev libssl-dev zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:37:58 UTC", "RemoteUrl": "https://github.com/bioc/AWAggregatorData", "RemoteRef": "HEAD", "RemoteSha": "1ef37b1613fb8adb30c51d43ae269d2f42931b41", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-10 10:51:45 UTC", "User": "root" }, "Author": "Jiahua Tan [aut, cre] (ORCID: ),\nGian L. Negri [aut] (ORCID: ),\nGregg B. Morin [aut] (ORCID: ),\nDavid D. Y. Chen [aut] (ORCID: )", "Maintainer": "Jiahua Tan ", "_user": "bioc", "_type": "src", "_file": "AWAggregatorData_1.3.0.tar.gz", "_fileid": "https://r2.ropensci.org/48fac59aa51125f35b5d09f13e3cb3257ccaa2f885ac7a65fa86a01a46bbf8c8", "_filesize": 80274, "_sha256": "48fac59aa51125f35b5d09f13e3cb3257ccaa2f885ac7a65fa86a01a46bbf8c8", "_expires": "2027-01-18T11:01:36.000Z", "_created": "2026-10-10T10:51:45.000Z", "_published": "2026-10-10T11:01:38.357Z", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/38045807214", "_status": "success", "_host": "GitHub-Actions", "_bioccheck": { "error": 0, "warning": 0, "note": 2 }, "_upstream": "https://github.com/bioc/AWAggregatorData", "_commit": { "id": "1ef37b1613fb8adb30c51d43ae269d2f42931b41", "author": "lshep ", "committer": "lshep ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777379878 }, "_maintainer": { "name": "Jiahua Tan", "email": "jiahuatan@chem.ubc.ca", "login": "tan-jiahua", "description": "", "uuid": 83559742, "orcid": "0000-0001-5839-1049" }, "_distro": "resolute", "_jobs": [ { "job": 114196750666, "time": 141, "config": "bioc-checks", "r": "4.6.1", "check": "NOTE", "artifact": "11667855473" }, { "job": 114196750641, "time": 545, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11668210668" }, { "job": 114196750647, "time": 399, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11666899375" }, { "job": 114195039056, "time": 595, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11667724578" } ], "_registered": true, "_dependencies": [ { "package": "ExperimentHub", "role": "Depends" }, { "package": "BiocStyle", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.3.0", "bioc": "3.24", "repository": "data/experiment" }, { "branch": "release", "version": "1.2.0", "bioc": "3.23", "repository": "data/experiment" } ], "_topics": [ "experimentdata", "packagetypedata", "experimenthub", "massspectrometrydata", "proteome", "datapkg" ], "_stars": 0, "_contributors": [ { "user": "tan-jiahua", "count": 3, "uuid": 83559742 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 476, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_devurl": "https://github.com/tan-jiahua/awaggregatordata", "_searchresults": 5, "_datapkg": true, "_rbuild": "4.6.1", "_assets": [ "extra/AWAggregatorData.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/readme.html", "extra/readme.md", "LICENSE" ], "_cranurl": false, "_exports": [ "loadQuantInaccuracyModel" ], "_help": [ { "page": "loadQuantInaccuracyModel", "title": "Load a Pre-trained Random Forest Model", "topics": [ "loadQuantInaccuracyModel" ] } ], "_readme": "https://github.com/bioc/AWAggregatorData/raw/HEAD/README.md", "_rundeps": [ "AnnotationDbi", "AnnotationHub", "askpass", "Biobase", "BiocBaseUtils", "BiocFileCache", "BiocGenerics", "BiocManager", "BiocVersion", "Biostrings", "bit", "bit64", "blob", "cachem", "cli", "cpp11", "crayon", "curl", "DBI", "dbplyr", "dplyr", "ExperimentHub", "fastmap", "filelock", "generics", "glue", "httr", "httr2", "IRanges", "jsonlite", "KEGGREST", "lifecycle", "magrittr", "memoise", "mime", "openssl", "pillar", "pkgconfig", "png", "purrr", "R6", "rappdirs", "rlang", "RSQLite", "S4Vectors", "Seqinfo", "stringi", "stringr", "sys", "tibble", "tidyr", "tidyselect", "utf8", "vctrs", "withr", "XVector", "yaml" ], "_vignettes": [ { "source": "AWAggregatorData-vignette.Rmd", "filename": "AWAggregatorData-vignette.html", "title": "AWAggregatorData Vignette", "author": "Jiahua Tan, Gian L. Negri, Gregg B. Morin, David D. Y. Chen", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Overview of Package Data", "Installation", "Load Data from ExperimentHub" ], "created": "2025-04-03 00:35:37", "modified": "2025-08-11 08:59:52", "commits": 4 } ], "_score": 4, "_indexed": true, "_nocasepkg": "awaggregatordata", "_universes": [ "bioc", "tan-jiahua" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.3.0", "date": "2026-10-10T10:55:29.000Z", "distro": "resolute", "commit": "1ef37b1613fb8adb30c51d43ae269d2f42931b41", "fileid": "https://r2.ropensci.org/ba936c618eb6713a77f12617162ece31f8e690d4f3356425ac90e921c6d6f434", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38045807214" }, { "r": "4.6.1", "os": "linux", "version": "1.3.0", "date": "2026-10-10T10:54:48.000Z", "distro": "resolute", "commit": "1ef37b1613fb8adb30c51d43ae269d2f42931b41", "fileid": "https://r2.ropensci.org/bc6838d9a827fa446df4ac6df6d76c3a46220725d1e090edae8278fe01687fab", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38045807214" } ] }