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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "anota2seq" in publications use:'
type: software
license: GPL-3.0-only
title: 'anota2seq: Generally applicable transcriptome-wide analysis of translational
  efficiency using anota2seq'
version: 1.27.0
doi: 10.1093/nar/gkz223
abstract: anota2seq provides analysis of translational efficiency and differential
  expression analysis for polysome-profiling and ribosome-profiling studies (two or
  more sample classes) quantified by RNA sequencing or DNA-microarray. Polysome-profiling
  and ribosome-profiling typically generate data for two RNA sources; translated mRNA
  and total mRNA. Analysis of differential expression is used to estimate changes
  within each RNA source (i.e. translated mRNA or total mRNA). Analysis of translational
  efficiency aims to identify changes in translation efficiency leading to altered
  protein levels that are independent of total mRNA levels (i.e. changes in translated
  mRNA that are independent of levels of total mRNA) or buffering, a mechanism regulating
  translational efficiency so that protein levels remain constant despite fluctuating
  total mRNA levels (i.e. changes in total mRNA that are independent of levels of
  translated mRNA). anota2seq applies analysis of partial variance and the random
  variance model to fulfill these tasks.
authors:
- family-names: Oertlin
  given-names: Christian
  email: christian.oertlin@ki.se
- family-names: Larsson
  given-names: Ola
  email: ola.larsson@ki.se
- family-names: Lorent
  given-names: Julie
  email: julie.lorent@ki.se
preferred-citation:
  type: article
  title: Generally applicable transcriptome-wide analysis of translation using anota2seq
  authors:
  - family-names: Oertlin
    given-names: Christian
    email: christian.oertlin@ki.se
  - family-names: Lorent
    given-names: Julie
    email: julie.lorent@ki.se
  - family-names: Murie
    given-names: Carl
  - family-names: Furic
    given-names: Luc
  - family-names: Topisirovic
    given-names: Ivan
  - family-names: Larsson
    given-names: Ola
    email: ola.larsson@ki.se
  journal: Nucleic Acids Research
  year: '2019'
  url: https://academic.oup.com/nar/article/47/12/e70/5423604
  doi: 10.1093/nar/gkz223
  publisher:
    name: Oxford Academic
repository: https://bioc.r-universe.dev
date-released: '2017-09-19'
contact:
- family-names: Oertlin
  given-names: Christian
  email: christian.oertlin@ki.se
- family-names: Larsson
  given-names: Ola
  email: ola.larsson@ki.se