Package: annmap
Type: Package
Title: Genome annotation and visualisation package pertaining to
        Affymetrix arrays and NGS analysis.
Description: annmap provides annotation mappings for Affymetrix exon
        arrays and coordinate based queries to support deep sequencing
        data analysis. Database access is hidden behind the API which
        provides a set of functions such as genesInRange(),
        geneToExon(), exonDetails(), etc. Functions to plot gene
        architecture and BAM file data are also provided. Underlying
        data are from Ensembl. The annmap database can be downloaded
        from:
        https://figshare.manchester.ac.uk/account/articles/16685071
Version: 1.55.1
Date: 2011-09-14
Author: Tim Yates <Tim.Yates@cruk.manchester.ac.uk>
Maintainer: Chris Wirth <Christopher.Wirth@cruk.manchester.ac.uk>
Depends: R (>= 2.15.0), methods, GenomicRanges
Imports: DBI, RMySQL (>= 0.6-0), digest, Biobase, grid, lattice,
        Rsamtools, genefilter, IRanges, BiocGenerics
Suggests: RUnit, rjson, Gviz
License: GPL-2
URL: https://github.com/cruk-mi/annmap
Collate: zzz.R db.R utils.R cache.R statements.R filtering.R utr.R
        coords.R ws.R plot.genomic.R plot.ngs.R si.R
biocViews: Annotation, Microarray, OneChannel, ReportWriting,
        Transcription, Visualization
Config/Bioconductor/UnsupportedPlatforms: windows
Config/pak/sysreqs: libbz2-dev liblzma-dev libmysqlclient-dev
        libpng-dev libxml2-dev libssl-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-05-29 16:18:21 UTC
RemoteUrl: https://github.com/bioc/annmap
RemoteRef: HEAD
RemoteSha: 6bccb78da99e75f955ccacb9ac5b4497125bc1f2
NeedsCompilation: no
Packaged: 2026-07-04 23:41:37 UTC; root