# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "anndataR" in publications use:'
type: software
license: MIT
title: 'anndataR: AnnData interoperability in R'
version: 1.3.0
doi: 10.1101/2025.08.18.669052
identifiers:
- type: doi
  value: 10.32614/CRAN.package.anndataR
abstract: Bring the power and flexibility of AnnData to the R ecosystem, allowing
  you to effortlessly manipulate and analyse your single-cell data. This package lets
  you work with backed h5ad and zarr files, directly access various slots (e.g. X,
  obs, var), or convert the data into SingleCellExperiment and Seurat objects.
authors:
- family-names: Cannoodt
  given-names: Robrecht
  email: rcannood@gmail.com
  orcid: https://orcid.org/0000-0003-3641-729X
- family-names: Zappia
  given-names: Luke
  email: luke@lazappi.id.au
  orcid: https://orcid.org/0000-0001-7744-8565
- family-names: Morgan
  given-names: Martin
  email: mtmorgan.bioc@gmail.com
  orcid: https://orcid.org/0000-0002-5874-8148
- family-names: Deconinck
  given-names: Louise
  email: louise.deconinck@gmail.com
  orcid: https://orcid.org/0000-0001-8100-6823
preferred-citation:
  type: article
  title: anndataR improves interoperability between R and Python in single-cell transcriptomics
  authors:
  - family-names: Deconinck
    given-names: Louise
    email: louise.deconinck@gmail.com
    orcid: https://orcid.org/0000-0001-8100-6823
  - family-names: Zappia
    given-names: Luke
    email: luke@lazappi.id.au
    orcid: https://orcid.org/0000-0001-7744-8565
  - family-names: Cannoodt
    given-names: Robrecht
    email: rcannood@gmail.com
    orcid: https://orcid.org/0000-0003-3641-729X
  - family-names: Morgan
    given-names: Martin
    email: mtmorgan.bioc@gmail.com
    orcid: https://orcid.org/0000-0002-5874-8148
  - name: scverse core
  - family-names: Virshup
    given-names: Isaac
  - family-names: Sang-aram
    given-names: Chananchida
  - family-names: Bredikhin
    given-names: Danila
  - family-names: Seurinck
    given-names: Ruth
  - family-names: Saeys
    given-names: Yvan
  journal: bioRxiv
  year: '2025'
  doi: 10.1101/2025.08.18.669052
  start: 2025.08.18.669052
repository: https://bioc.r-universe.dev
repository-code: https://github.com/scverse/anndataR
commit: a460e0597e121b0ce1b022f12e7b63765e9ea147
url: https://anndataR.scverse.org/
date-released: '2026-04-28'
contact:
- family-names: Cannoodt
  given-names: Robrecht
  email: rcannood@gmail.com
  orcid: https://orcid.org/0000-0003-3641-729X