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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "anansi" in publications use:'
type: software
license: GPL-3.0-only
title: 'anansi: Annotation-Based Analysis of Specific Interactions'
version: 1.3.0
doi: 10.48550/arXiv.2305.10832
identifiers:
- type: doi
  value: 10.32614/CRAN.package.anansi
abstract: Studies including both microbiome and metabolomics data are becoming more
  common. Often, it would be helpful to integrate both datasets in order to see if
  they corroborate each others patterns. All vs all association is imprecise and likely
  to yield spurious associations. This package takes a knowledge-based approach to
  constrain association search space, only considering metabolite-function pairs that
  have been recorded in a pathway database. This package also provides a framework
  to assess differential association.
authors:
- family-names: Bastiaanssen
  given-names: Thomaz
  email: thomazbastiaanssen@gmail.com
  orcid: https://orcid.org/0000-0001-6891-734X
- family-names: Quinn
  given-names: Thomas
  email: contacttomquinn@gmail.com
  orcid: https://orcid.org/0000-0003-0286-6329
- family-names: Benedetti
  given-names: Giulio
  email: giulio.benedetti@utu.fi
  orcid: https://orcid.org/0000-0002-8732-7692
- family-names: Borman
  given-names: Tuomas
  email: tuomas.v.borman@utu.fi
  orcid: https://orcid.org/0000-0002-8563-8884
- family-names: Lahti
  given-names: Leo
  email: leo.lahti@utu.fi
  orcid: https://orcid.org/0000-0001-5537-637X
preferred-citation:
  type: article
  title: 'Knowledge-based Integration of Multi-Omic Datasets with Anansi: Annotation-based
    Analysis of Specific Interactions'
  authors:
  - family-names: Bastiaanssen
    given-names: Thomaz F S
  - family-names: Quinn
    given-names: Thomas P
  - family-names: Cryan
    given-names: John F
  journal: arXiv
  year: '2023'
  doi: 10.48550/arXiv.2305.10832
repository: https://bioc.r-universe.dev
repository-code: https://github.com/thomazbastiaanssen/anansi
commit: 536c3f2c5515c4183add08a6db0790d0eeaa6b32
url: https://thomazbastiaanssen.github.io/anansi
date-released: '2026-04-28'
contact:
- family-names: Bastiaanssen
  given-names: Thomaz
  email: thomazbastiaanssen@gmail.com
  orcid: https://orcid.org/0000-0001-6891-734X