Package: anansi
Type: Package
Title: Annotation-Based Analysis of Specific Interactions
Version: 1.3.0
Authors@R: c(
   person("Thomaz", "Bastiaanssen", email = "thomazbastiaanssen@gmail.com", 
       role = c("aut", "cre"), comment = c(ORCID = "0000-0001-6891-734X")), 
   person("Thomas", "Quinn", email = "contacttomquinn@gmail.com", 
       role = c("aut"), comment = c(ORCID = "0000-0003-0286-6329")),
   person("Giulio", "Benedetti", email = "giulio.benedetti@utu.fi", 
       role = c("aut"), comment = c(ORCID = "0000-0002-8732-7692")), 
   person("Tuomas", "Borman", email = "tuomas.v.borman@utu.fi", 
       role = c("aut"), comment = c(ORCID = "0000-0002-8563-8884")), 
   person("Leo", "Lahti", email = "leo.lahti@utu.fi",
       role = c("aut"), comment = c(ORCID = "0000-0001-5537-637X"))    
   )
Description: Studies including both microbiome and metabolomics data
        are becoming more common. Often, it would be helpful to
        integrate both datasets in order to see if they corroborate
        each others patterns. All vs all association is imprecise and
        likely to yield spurious associations. This package takes a
        knowledge-based approach to constrain association search space,
        only considering metabolite-function pairs that have been
        recorded in a pathway database. This package also provides a
        framework to assess differential association.
Depends: R (>= 4.5.0)
Imports: S7, stats, methods, igraph, Matrix, forcats, S4Vectors,
        SummarizedExperiment, MultiAssayExperiment,
        SingleCellExperiment, TreeSummarizedExperiment, rlang, ggplot2,
        ggforce, patchwork, ggraph, tidygraph
Suggests: BiocStyle, dplyr, tidyr, graph, mia, KEGGREST, testthat (>=
        3.0.0), knitr, rmarkdown
License: GPL-3
Encoding: UTF-8
LazyData: false
RoxygenNote: 7.3.3
Config/testthat/edition: 3
biocViews: Microbiome, Metabolomics, Regression, Pathways, KEGG
URL: https://github.com/thomazbastiaanssen/anansi,
        https://thomazbastiaanssen.github.io/anansi
BugReports: https://github.com/thomazbastiaanssen/anansi/issues
VignetteBuilder: knitr
Roxygen: list(markdown = TRUE)
Config/pak/sysreqs: cmake libfontconfig1-dev libfreetype6-dev
        libglpk-dev make libicu-dev libuv1-dev libxml2-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 13:05:41 UTC
RemoteUrl: https://github.com/bioc/anansi
RemoteRef: HEAD
RemoteSha: 536c3f2c5515c4183add08a6db0790d0eeaa6b32
NeedsCompilation: no
Packaged: 2026-05-27 06:17:01 UTC; root
Author: Thomaz Bastiaanssen [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-6891-734X>),
  Thomas Quinn [aut] (ORCID: <https://orcid.org/0000-0003-0286-6329>),
  Giulio Benedetti [aut] (ORCID: <https://orcid.org/0000-0002-8732-7692>),
  Tuomas Borman [aut] (ORCID: <https://orcid.org/0000-0002-8563-8884>),
  Leo Lahti [aut] (ORCID: <https://orcid.org/0000-0001-5537-637X>)
Maintainer: Thomaz Bastiaanssen <thomazbastiaanssen@gmail.com>