Package 'affydata'

Title: Affymetrix Data for Demonstration Purpose
Description: Example datasets of a slightly large size. They represent 'real world examples', unlike the artificial examples included in the package affy.
Authors: Laurent Gautier <[email protected]>
Maintainer: Robert D Shear <[email protected]>
License: GPL (>= 2)
Version: 1.61.0
Built: 2026-10-10 10:27:26 UTC
Source: https://github.com/bioc/affydata

Help Index


AffyBatch instance Dilution

Description

This AffyBatch-class object represents part of a dilution experiment dataset.

Usage

data(Dilution)

Format

An AffyBatch-class object containing 4 arrays.

Source

Two sources of cRNA A (human liver tissue) and B (Central Nervous System cell line) have been hybridized to human array (HGU95A) in a range of proportions and dilutions. This data set is taken from arrays hybridized to source A at 10.0 and 20 μ\mug. We have two replicate arrays for each generated cRNA. Three scanners have been used in this study. Each array replicate was processed in a different scanner.

For more information see Gautier et al., affy - Analysis of Affymetrix GeneChip data at the probe level http://bioinformatics.oxfordjournals.org/content/20/3/307.full.pdf Bioinformatics, 2004