# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "affyPLM" in publications use:'
type: software
license: GPL-2.0-or-later
title: 'affyPLM: Methods for fitting probe-level models'
version: 1.81.1
identifiers:
- type: doi
  value: 10.32614/CRAN.package.affyPLM
abstract: A package that extends and improves the functionality of the base affy package.
  Routines that make heavy use of compiled code for speed. Central focus is on implementation
  of methods for fitting probe-level models and tools using these models. PLM based
  quality assessment tools.
authors:
- family-names: Bolstad
  given-names: Ben
  email: bmb@bmbolstad.com
preferred-citation:
  type: thesis
  title: 'Low Level Analysis of High-density Oligonucleotide Array Data: Background,
    Normalization and Summarization'
  authors:
  - family-names: Bolstad
    given-names: Benjamin M
  year: '2004'
  institution:
    name: University of California, Berkeley.
  thesis-type: PhD Thesis
repository: https://bioc.r-universe.dev
repository-code: https://github.com/bmbolstad/affyPLM
commit: 6cf2b8456b73d00add320324b544f7cbdbf238c9
url: https://github.com/bmbolstad/affyPLM
contact:
- family-names: Bolstad
  given-names: Ben
  email: bmb@bmbolstad.com
references:
- type: generic
  title: Quality Assessment of Affymetrix GeneChip Data
  authors:
  - family-names: Bolstad
    given-names: Benjamin M
  - family-names: Collin
    given-names: Francois
  - family-names: Brettschneider
    given-names: Julia
  - family-names: Simpson
    given-names: Ken
  - family-names: Cope
    given-names: Leslie
  - family-names: Irizarry
    given-names: Rafael A
  - family-names: Speed
    given-names: Terence P
  collection-title: Bioinformatics and Computational Biology Solutions using R and
    Bioconductor
  collection-type: collection
  editors:
  - family-names: Gentleman
    given-names: R.
  - family-names: Carey
    given-names: V.
  - family-names: Huber
    given-names: W.
  - family-names: Irizarry
    given-names: R
  - family-names: Dudoit
    given-names: S
  publisher:
    name: Springer
    address: New York
  year: '2005'
  section: '3'
  start: '33'
  end: '47'
- type: article
  title: Quality assessment for short oligonucleotide arrays.
  authors:
  - family-names: Brettschneider
    given-names: Julia
  - family-names: Collin
    given-names: Francois
  - family-names: Bolstad
    given-names: Benjamin M
  - family-names: Speed
    given-names: Terence P
  journal: Technometrics
  year: '2007'
  volume: In press