Package: XeniumIO
Type: Package
Title: Import and represent Xenium data from the 10X Xenium Analyzer
Version: 1.5.0
Authors@R: c(
    person("Marcel", "Ramos", , "marcel.ramos@sph.cuny.edu", c("aut", "cre"),
        c(ORCID = "0000-0002-3242-0582")
    ),
    person("Dario", "Righelli", role = "ctb"),
    person("Estella", "Dong", role = "ctb"),
    person("NCI", role = "fnd", comment = c(GrantNo. = "U24CA289073"))
    )
Description: The package allows users to readily import spatial data
        obtained from the 10X Xenium Analyzer pipeline. Supported
        formats include 'parquet', 'h5', and 'mtx' files. The package
        mainly represents data as SpatialExperiment objects.
License: Artistic-2.0
Depends: TENxIO, R (>= 4.5.0)
Imports: BiocBaseUtils, BiocGenerics, BiocIO, jsonlite, methods,
        S4Vectors, SingleCellExperiment, SpatialExperiment,
        SummarizedExperiment, VisiumIO (>= 1.7.5)
Suggests: arrow, BiocFileCache, BiocStyle, knitr, rmarkdown, tinytest
biocViews: Software, Infrastructure, DataImport, SingleCell, Spatial
VignetteBuilder: knitr
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
BugReports: https://github.com/waldronlab/XeniumIO/issues
URL: https://github.com/waldronlab/XeniumIO
Collate: 'XeniumFile.R' 'TENxXenium-class.R' 'XeniumIO-package.R'
        'utilities.R'
Date: 2025-12-11
Config/pak/sysreqs: libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev
        libmagick++-dev gsfonts libicu-dev libssl-dev libproj-dev
        libsqlite3-dev libudunits2-dev libx11-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 13:04:26 UTC
RemoteUrl: https://github.com/bioc/XeniumIO
RemoteRef: HEAD
RemoteSha: 0e7d3811a3460c4fb05672b41fd0ed64d62d1b71
NeedsCompilation: no
Packaged: 2026-05-29 09:45:15 UTC; root
Author: Marcel Ramos [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-3242-0582>),
  Dario Righelli [ctb],
  Estella Dong [ctb],
  NCI [fnd] (GrantNo.: U24CA289073)
Maintainer: Marcel Ramos <marcel.ramos@sph.cuny.edu>