# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "Voyager" in publications use:'
type: software
license: Artistic-2.0
title: 'Voyager: From geospatial to spatial omics'
version: 1.7.2
doi: 10.1101/2023.07.20.549945
identifiers:
- type: doi
  value: 10.32614/CRAN.package.Voyager
abstract: SpatialFeatureExperiment (SFE) is a new S4 class for working with spatial
  single-cell genomics data. The voyager package implements basic exploratory spatial
  data analysis (ESDA) methods for SFE. Univariate methods include univariate global
  spatial ESDA methods such as Moran's I, permutation testing for Moran's I, and correlograms.
  Bivariate methods include Lee's L and cross variogram. Multivariate methods include
  MULTISPATI PCA and multivariate local Geary's C recently developed by Anselin. The
  Voyager package also implements plotting functions to plot SFE data and ESDA results.
authors:
- family-names: Moses
  given-names: Lambda
  email: dl3764@columbia.edu
  orcid: https://orcid.org/0000-0002-7092-9427
- family-names: Huseynov
  given-names: Alik
  orcid: https://orcid.org/0000-0002-1438-4389
- family-names: Jackson
  given-names: Kayla
  email: kaylajac@caltech.edu
  orcid: https://orcid.org/0000-0001-6483-0108
- family-names: Luebbert
  given-names: Laura
  email: lauraluebbert@caltech.edu
  orcid: https://orcid.org/0000-0003-1379-2927
- family-names: Pachter
  given-names: Lior
  email: lpachter@caltech.edu
  orcid: https://orcid.org/0000-0002-9164-6231
preferred-citation:
  type: article
  title: 'Voyager: exploratory single-cell genomics data analysis with geospatial
    statistics'
  authors:
  - family-names: Moses
    given-names: Lambda
    email: dlu2@caltech.edu
    orcid: https://orcid.org/0000-0002-7092-9427
  - family-names: Einarsson
    given-names: Pétur Helgi
    orcid: https://orcid.org/0000-0002-1665-7459
  - family-names: Jackson
    given-names: Kayla
    email: kaylajac@caltech.edu
    orcid: https://orcid.org/0000-0001-6483-0108
  - family-names: Luebbert
    given-names: Laura
    email: lauraluebbert@caltech.edu
    orcid: https://orcid.org/0000-0003-1379-2927
  - family-names: Booeshaghi
    given-names: Sina
    email: sbooeshaghi@gmail.com
    orcid: https://orcid.org/0000-0002-6442-4502
  - family-names: Antonsson
    given-names: Sindri
    orcid: https://orcid.org/0009-0005-0779-6923
  - family-names: Melsted
    given-names: Páll
    orcid: https://orcid.org/0000-0002-8418-6724
  - family-names: Pachter
    given-names: Lior
    email: lpachter@caltech.edu
    orcid: https://orcid.org/0000-0002-9164-6231
  journal: bioRxiv
  year: '2023'
  doi: 10.1101/2023.07.20.549945
repository: https://bioc.r-universe.dev
repository-code: https://github.com/pachterlab/voyager
commit: aa91d5425d5652b4c1ec7bdcd924160ee76dd59d
url: https://github.com/pachterlab/voyager
contact:
- family-names: Moses
  given-names: Lambda
  email: dl3764@columbia.edu
  orcid: https://orcid.org/0000-0002-7092-9427