Obenchain V, Lawrence M, Carey V, Gogarten S, Shannon P, Morgan M (2014). “VariantAnnotation: a Bioconductor package for exploration and annotation of genetic variants.” Bioinformatics, 30(14), 2076-2078. doi:10.1093/bioinformatics/btu168.

Corresponding BibTeX entry:

  @Article{Obenchain15072014,
    author = {Valerie Obenchain and Michael Lawrence and Vincent Carey
      and Stephanie Gogarten and Paul Shannon and Martin Morgan},
    title = {VariantAnnotation: a Bioconductor package for exploration
      and annotation of genetic variants},
    volume = {30},
    number = {14},
    pages = {2076-2078},
    year = {2014},
    doi = {10.1093/bioinformatics/btu168},
    abstract = {Summary: VariantAnnotation is an R / Bioconductor
      package for the exploration and annotation of genetic variants.
      Capabilities exist for reading, writing and filtering variant
      call format (VCF) files. VariantAnnotation allows ready access to
      additional R / Bioconductor facilities for advanced statistical
      analysis, data transformation, visualization and integration with
      diverse genomic resources. Availability and implementation: This
      package is implemented in R and available for download at the
      Bioconductor Web site
      (http://bioconductor.org/packages/2.13/bioc/html/VariantAnnotation.html).
      The package contains extensive help pages for individual
      functions and a 'vignette' outlining typical work flows; it is
      made available under the open source 'Artistic-2.0' license.
      Version 1.9.38 was used in this article. Contact:
      [email protected]},
    journal = {Bioinformatics},
  }