Package: VariantAnnotation Type: Package Title: Annotation of Genetic Variants Description: Annotate variants, compute amino acid coding changes, predict coding outcomes. Version: 1.59.0 Authors@R: c( person("Valerie", "Oberchain", role="aut"), person("Martin", "Morgan", role="aut"), person("Michael", "Lawrence", role="aut"), person("Stephanie", "Gogarten", role="ctb"), person("Bioconductor Package Maintainer", role="cre", email="maintainer@bioconductor.org")) License: Artistic-2.0 Depends: R (>= 4.0.0), methods, BiocGenerics (>= 0.37.0), MatrixGenerics, Seqinfo, GenomicRanges (>= 1.61.1), SummarizedExperiment (>= 1.39.1), Rsamtools (>= 2.25.1) Imports: utils, DBI, Biobase, S4Vectors (>= 0.27.12), IRanges (>= 2.23.9), XVector (>= 0.29.2), Biostrings (>= 2.77.2), AnnotationDbi (>= 1.27.9), rtracklayer (>= 1.69.1), BSgenome (>= 1.77.1), GenomicFeatures (>= 1.61.4), curl Suggests: GenomeInfoDb, RUnit, AnnotationHub, BSgenome.Hsapiens.UCSC.hg19, TxDb.Hsapiens.UCSC.hg19.knownGene, SNPlocs.Hsapiens.dbSNP144.GRCh37, SIFT.Hsapiens.dbSNP132, SIFT.Hsapiens.dbSNP137, PolyPhen.Hsapiens.dbSNP131, snpStats, ggplot2, BiocStyle, knitr, magick, jsonlite, httr, rjsoncons LinkingTo: S4Vectors, IRanges, XVector, Biostrings, Rhtslib (>= 2.99.0) SystemRequirements: GNU make LazyLoad: yes biocViews: DataImport, Sequencing, SNP, Annotation, Genetics, VariantAnnotation Video: https://www.youtube.com/watch?v=Ro0lHQ_J--I&list=UUqaMSQd_h-2EDGsU6WDiX0Q RoxygenNote: 7.3.1 VignetteBuilder: knitr Config/pak/sysreqs: make libbz2-dev liblzma-dev libpng-dev libxml2-dev libssl-dev xz-utils zlib1g-dev Repository: https://bioc.r-universe.dev Date/Publication: 2026-04-28 12:35:39 UTC RemoteUrl: https://github.com/bioc/VariantAnnotation RemoteRef: HEAD RemoteSha: 708bb312c3867eafc39bdbf68dce74cc90df8304 NeedsCompilation: yes Packaged: 2026-06-23 15:08:56 UTC; root Author: Valerie Oberchain [aut], Martin Morgan [aut], Michael Lawrence [aut], Stephanie Gogarten [ctb], Bioconductor Package Maintainer [cre] Maintainer: Bioconductor Package Maintainer