Package: VaSP Type: Package Version: 1.25.0 Title: Quantification and Visualization of Variations of Splicing in Population Authors@R: c(person("Huihui", "Yu", role = c("aut", "cre"), email = "yuhuihui2011@foxmail.com", comment = c(ORCID = "0000-0003-2725-1937")), person("Qian", "Du", role="aut",email = "djyjin@gmail.com", comment = c(ORCID = '0000-0003-3864-8745')), person("Chi", "Zhang", role="aut", email="czhang5@unl.edu", comment = c(ORCID = '0000-0002-1827-8137'))) Description: Discovery of genome-wide variable alternative splicing events from short-read RNA-seq data and visualizations of gene splicing information for publication-quality multi-panel figures in a population. (Warning: The visualizing function is removed due to the dependent package Sushi deprecated. If you want to use it, please change back to an older version.) URL: https://github.com/yuhuihui2011/VaSP BugReports: https://github.com/yuhuihui2011/VaSP/issues License: GPL (>= 2.0) Depends: R (>= 4.0), ballgown Imports: IRanges, GenomicRanges, S4Vectors, parallel, matrixStats, GenomicAlignments, GenomeInfoDb, Rsamtools, cluster, stats, graphics, methods Suggests: knitr, rmarkdown VignetteBuilder: knitr biocViews: RNASeq, AlternativeSplicing, DifferentialSplicing, StatisticalMethod, Visualization, Preprocessing, Clustering, DifferentialExpression, KEGG, ImmunoOncology Encoding: UTF-8 LazyData: false RoxygenNote: 7.1.1 Config/pak/sysreqs: make libbz2-dev liblzma-dev libpng-dev libxml2-dev libssl-dev xz-utils zlib1g-dev Repository: https://bioc.r-universe.dev Date/Publication: 2026-04-28 12:51:53 UTC RemoteUrl: https://github.com/bioc/VaSP RemoteRef: HEAD RemoteSha: e2d52d774bdbd962218bba7c76c3356587e511bd NeedsCompilation: no Packaged: 2026-04-29 07:52:44 UTC; root Author: Huihui Yu [aut, cre] (ORCID: ), Qian Du [aut] (ORCID: ), Chi Zhang [aut] (ORCID: ) Maintainer: Huihui Yu