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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "VDJdive" in publications use:'
type: software
license: Artistic-2.0
title: 'VDJdive: Analysis Tools for 10X V(D)J Data'
version: 1.7.0
doi: 10.32614/CRAN.package.VDJdive
abstract: This package provides functions for handling and analyzing immune receptor
  repertoire data, such as produced by the CellRanger V(D)J pipeline. This includes
  reading the data into R, merging it with paired single-cell data, quantifying clonotype
  abundances, calculating diversity metrics, and producing common plots. It implements
  the E-M Algorithm for clonotype assignment, along with other methods, which makes
  use of ambiguous cells for improved quantification.
authors:
- family-names: Street
  given-names: Kelly
  email: street.kelly@gmail.com
  orcid: https://orcid.org/0000-0001-6379-5013
- family-names: Movassagh
  given-names: Mercedeh
  email: mercedeh@ds.dfci.harvard.edu
  orcid: https://orcid.org/0000-0001-7690-0230
- family-names: Lundell
  given-names: Jill
  email: jflundell@gmail.com
  orcid: https://orcid.org/0000-0002-6048-4700
repository: https://bioc.r-universe.dev
repository-code: https://github.com/kstreet13/VDJdive
commit: b85878d91c8c06dd6b68df9be4b907fcba9a0ac0
url: https://github.com/kstreet13/VDJdive
contact:
- family-names: Street
  given-names: Kelly
  email: street.kelly@gmail.com
  orcid: https://orcid.org/0000-0001-6379-5013