Package: VCFArray
Title: Representing on-disk / remote VCF files as array-like objects
Version: 1.29.0
Authors@R: c(
    person("Qian", "Liu", email = "qliu7@buffalo.edu", role = c("aut", "cre")),	
    person("Martin", "Morgan", role = "aut"))	       
Description: VCFArray extends the DelayedArray to represent VCF data
        entries as array-like objects with on-disk / remote VCF file as
        backend. Data entries from VCF files, including info fields,
        FORMAT fields, and the fixed columns (REF, ALT, QUAL, FILTER)
        could be converted into VCFArray instances with different
        dimensions.
biocViews: Infrastructure, DataRepresentation, Sequencing,
        VariantAnnotation
Depends: R (>= 3.6), methods, BiocGenerics, DelayedArray (>= 0.7.28)
License: GPL-3
Encoding: UTF-8
URL: https://github.com/Liubuntu/VCFArray
BugReports: https://github.com/Liubuntu/VCFArray/issues
Imports: tools, GenomicRanges, VariantAnnotation (>= 1.29.3),
        GenomicFiles (>= 1.17.3), S4Vectors (>= 0.19.19), Rsamtools
RoxygenNote: 6.1.1
VignetteBuilder: knitr
Suggests: SeqArray, BiocStyle, BiocManager, testthat, knitr, rmarkdown
Config/pak/sysreqs: make libbz2-dev liblzma-dev libpng-dev libxml2-dev
        libssl-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:49:17 UTC
RemoteUrl: https://github.com/bioc/VCFArray
RemoteRef: HEAD
RemoteSha: e9c7ac343f37c36ba105b9d93658e9004476c391
NeedsCompilation: no
Packaged: 2026-07-03 06:19:51 UTC; root
Author: Qian Liu [aut, cre],
  Martin Morgan [aut]
Maintainer: Qian Liu <qliu7@buffalo.edu>