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# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "TraianProt" in publications use:'
type: software
license: GPL-3.0-or-later
title: 'TraianProt: TraianProt: a user-friendly R package for wide format proteomics
  data downstream analysis'
version: 0.99.16
abstract: A proteomics data analysis platform that enables the analysis of both label-free
  and labeled data from Data-Dependent or Data-Independent Acquisition mass spectrometry
  mode, supporting MaxQuant, MSFragger, DIA-NN, ProteoScape, and Proteome Discoverer
  output formats. TraianProt provides a comprehensive suite of stepwise downstream
  analysis modules, which includes data filtering, normalization procedures, and missing
  value imputation strategies. The platform also incorporates robust statistical frameworks
  for differential expression testing, with peptide-spectrum match level correction,
  thereby enhancing the reliability of biological interpretations.
authors:
- family-names: Camara Fuentes
  given-names: Samuel
  name-particle: de la
  email: sdelacam@ucm.es
  orcid: https://orcid.org/0000-0001-6718-5896
repository: https://bioc.r-universe.dev
repository-code: https://github.com/SamueldelaCamaraFuentes/TraianProt
commit: ee5dcc08bcf0976549253d10d63ac4602392a46f
url: https://github.com/SamueldelaCamaraFuentes/TraianProt
date-released: '2026-07-16'
contact:
- family-names: Camara Fuentes
  given-names: Samuel
  name-particle: de la
  email: sdelacam@ucm.es
  orcid: https://orcid.org/0000-0001-6718-5896