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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "TrIdent" in publications use:'
type: software
license: GPL-2.0-only
title: 'TrIdent: TrIdent - Transduction Identification'
version: 0.99.3
doi: 10.32614/CRAN.package.TrIdent
abstract: The `TrIdent` R package automates the analysis of transductomics data by
  detecting, classifying, and characterizing read coverage patterns associated with
  potential transduction events. Transductomics is a DNA sequencing-based method for
  the detection and characterization of transduction events in pure cultures and complex
  communities. Transductomics relies on mapping sequencing reads from a viral-like
  particle (VLP)-fraction of a sample to contigs assembled from the metagenome (whole-community)
  of the same sample. Reads from bacterial DNA carried by VLPs will map back to the
  bacterial contigs of origin creating read coverage patterns indicative of ongoing
  transduction.
authors:
- family-names: Maier
  given-names: Jessie
  email: jlmaier@ncsu.edu
  orcid: https://orcid.org/0009-0001-8575-5386
- family-names: Rabasco
  given-names: Jorden
  orcid: https://orcid.org/0000-0002-6971-6678
- family-names: Gin
  given-names: Craig
  orcid: https://orcid.org/0000-0002-7447-663X
- family-names: Callahan
  given-names: Benjamin
  orcid: https://orcid.org/0000-0002-8752-117X
- family-names: Kleiner
  given-names: Manuel
  orcid: https://orcid.org/0000-0001-6904-0287
repository: https://bioc.r-universe.dev
repository-code: https://github.com/jlmaier12/TrIdent
commit: bdb120b45c511f9590c8ee987461fd0dd8bf2cc9
url: https://jlmaier12.github.io/TrIdent/
contact:
- family-names: Maier
  given-names: Jessie
  email: jlmaier@ncsu.edu
  orcid: https://orcid.org/0009-0001-8575-5386