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# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "TiDEomics" in publications use:'
type: software
license: GPL-2.0-or-later
title: 'TiDEomics: Time-course Differential Expression analysis of omics data'
version: 0.99.5
doi: 10.32614/CRAN.package.TiDEomics
abstract: TiDEomics provides a comprehensive workflow for multi-group time-course
  omics data analysis, analysing time-dominant, group-dominant, and group-specific
  temporal effects through pairwise differential expression, variance decomposition,
  and co-expression module analysis (WGCNA). The package integrates quality control,
  data processing, functional enrichment, and extensive visualisation. It supports
  datasets with missing values (e.g., mass spectrometry-based proteomics), and operates
  on SummarizedExperiment objects to ensure compatibility with the Bioconductor ecosystem.
authors:
- family-names: He
  given-names: Tianen
  email: tianen.he@ndm.ox.ac.uk
  orcid: https://orcid.org/0000-0001-6864-0723
repository: https://bioc.r-universe.dev
repository-code: https://github.com/hte123/TiDEomics
commit: ca26312c86214fd3ec8d103e330224611463edd3
url: https://hte123.github.io/TiDEomics
date-released: '2026-07-31'
contact:
- family-names: He
  given-names: Tianen
  email: tianen.he@ndm.ox.ac.uk
  orcid: https://orcid.org/0000-0001-6864-0723