Changes in version 0.99.5                        

SIGNIFICANT USER-VISIBLE CHANGES

  - enrich_p_threshold renamed to enrich_threshold in plot_modules_h().
  - assay parameter in plot_modules_h() and plot_modules_v() now must be
    specified explicitly (no default).
  - prepare_WGCNA(): assay parameter must be specified explicitly (no
    default).
  - plot_trend(): ylab parameter renamed to ylabel, default changed from
    "Abundance" to "Log2 abundance".
  - plot_modules_v(): default ylabel changed from "Log2 abundance
    normalised to Time 0" to "Log2 abundance".
  - plot_cor_matrix(): default title changed from "Correlation between
    samples" to NULL; the title is now auto-generated as "Sample
    correlation (<Method>)" with the method capitalised (e.g. "Sample
    correlation (Spearman)").
  - plot_pca() and plot_umap(): when circle = TRUE, auto-computed axis
    limits now use 0.35x padding around the data range (via
    coord_cartesian()) instead of 1.5x the min/max (via xlim()/ylim()).

                       Changes in version 0.99.4                        

  - Accepted by Bioconductor.