To cite the TaxSEA package in publications, please use:

  Pham C, Rankin T, Stinear T, Walsh C, Ryan F (2025). “TaxSEA: rapid
  interpretation of microbiome alterations using taxon set enrichment
  analysis and public databases.” _Briefings in Bioinformatics_,
  *Volume 26, Issue 2*. doi:10.1093/bib/bbaf173
  <https://doi.org/10.1093/bib/bbaf173>.
  <https://doi.org/10.1093/bib/bbaf173>.

A BibTeX entry for LaTeX users is

  @Article{,
    title = {TaxSEA: rapid interpretation of microbiome alterations using taxon set enrichment analysis and public databases},
    author = {Cong M Pham and Timothy J Rankin and Timothy P Stinear and Calum J Walsh and Feargal J Ryan},
    journal = {Briefings in Bioinformatics},
    year = {2025},
    volume = {Volume 26, Issue 2},
    doi = {10.1093/bib/bbaf173},
    url = {https://doi.org/10.1093/bib/bbaf173},
  }

We also encourage citing any relevant datasets or databases (e.g.
BugSigDB, MiMeDB, GutMGene, mBodyMap, GMRepoV2) used in your analysis
with TaxSEA.