To cite the TaxSEA package in publications, please use:

Pham C, Rankin T, Stinear T, Walsh C, Ryan F (2025). “TaxSEA: rapid interpretation of microbiome alterations using taxon set enrichment analysis and public databases.” Briefings in Bioinformatics, Volume 26, Issue 2. doi:10.1093/bib/bbaf173. https://doi.org/10.1093/bib/bbaf173.

We also encourage citing any relevant datasets or databases (e.g. BugSigDB, MiMeDB, GutMGene, mBodyMap, GMRepoV2) used in your analysis with TaxSEA.

Corresponding BibTeX entry:

  @Article{,
    title = {TaxSEA: rapid interpretation of microbiome alterations
      using taxon set enrichment analysis and public databases},
    author = {Cong M Pham and Timothy J Rankin and Timothy P Stinear
      and Calum J Walsh and Feargal J Ryan},
    journal = {Briefings in Bioinformatics},
    year = {2025},
    volume = {Volume 26, Issue 2},
    doi = {10.1093/bib/bbaf173},
    url = {https://doi.org/10.1093/bib/bbaf173},
  }