NEWS

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TaxSEA 1.3.3

• Add ssTaxSEA() function for single sample enrichment testing and documentation

TaxSEA 1.3.2

• Add taxon_rank_sets() helper with documentation and tests
• Add functionality to interact with tse objects

TaxSEA 1.3.1

• Internal refactor to modular analysis pipeline
• Added infrastructure for over-representation analysis (ORA).
• Improved internal input preparation and validation.

Version 1.1.8 (2025-08-12)

• Added output for all taxon sets
• Fixed spelling in GutMGene_producers_of_Phenyalanine

Version 1.1.7 (2025-08-11)

• Added Gut-Brain modules database from Valles-Colomer et al. Nature Microbiology. 2019.

Version 1.1.6 (2025-08-08)

• Bug fixes

Version 1.1.5 (2025-08-06)

• Fixed bug in BacDive Database

Version 1.1.4 (2025-08-05)

• Added BacDive Database
• Added Blossum and VANISH taxon sets in disease associations category

Version 0.99.2 (2025-02-20)

• Added ability to test custom taxon sets using custom_db parameter.
• Removed deprecated plotting.R file.
• TaxSEA now reports the KS test statistic for each taxon set.

Version 0.99.1 (2025-02-11)

• Bringing into line with requirements for BioConductor submission