| Title: | 10x And SmartSeq2 Data From The Tabula Muris Consortium |
|---|---|
| Description: | Access to processed 10x (droplet) and SmartSeq2 (on FACS-sorted cells) single-cell RNA-seq data from the Tabula Muris consortium (http://tabula-muris.ds.czbiohub.org/). |
| Authors: | Charlotte Soneson [aut, cre] (ORCID: <https://orcid.org/0000-0003-3833-2169>) |
| Maintainer: | Charlotte Soneson <[email protected]> |
| License: | MIT + file LICENSE |
| Version: | 1.31.1 |
| Built: | 2026-10-10 10:40:05 UTC |
| Source: | https://github.com/bioc/TabulaMurisData |
This ExperimentHub package provides access to the 10x (droplet) and SmartSeq2 (on FACS-sorted cells) single-cell RNA-seq data from the Tabula Muris Consortium (http://tabula-muris.ds.czbiohub.org/)
Charlotte Soneson
The Tabula Muris Consortium: Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris. Nature doi:10.1038/s41586-018-0590-4 (2018).
UMI counts from the 10x (droplet) single-cell RNA-seq data collected by the Tabula Muris Consortium. The object contains counts for 23,341 genes in 70,118 cells.
TabulaMurisDroplet(metadata = FALSE)TabulaMurisDroplet(metadata = FALSE)
metadata |
Logical, whether only metadata should be returned |
SingleCellExperiment
Returns a SingleCellExperiment object.
Charlotte Soneson
The Tabula Muris Consortium: Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris. Nature doi:10.1038/s41586-018-0590-4 (2018).
TabulaMurisDroplet(metadata = FALSE)TabulaMurisDroplet(metadata = FALSE)
Read counts from the SmartSeq2 (on FACS-sorted cells) single-cell RNA-seq data collected by the Tabula Muris Consortium. The object contains counts for 23,433 features (23,341 genes and 92 ERCC spike-ins) in 53,760 cells.
TabulaMurisSmartSeq2(metadata = FALSE)TabulaMurisSmartSeq2(metadata = FALSE)
metadata |
Logical, whether only metadata should be returned |
SingleCellExperiment
Returns a SingleCellExperiment object.
Charlotte Soneson
The Tabula Muris Consortium: Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris. Nature doi:10.1038/s41586-018-0590-4 (2018).
TabulaMurisSmartSeq2(metadata = FALSE)TabulaMurisSmartSeq2(metadata = FALSE)