Package: TSAR
Type: Package
Title: Thermal Shift Analysis in R
Version: 1.11.0
Year: 2025
Authors@R: c(person("Xinlin", 
			"Gao", 
			email = "candygao2015@outlook.com", 
			role = c("aut", "cre"),
			comment = c(ORCID = "0009-0002-2518-235X")),
		person(c("William", "M."), 
			"McFadden", 
			email = "wmm27@pitt.edu", 
			role = c("aut","fnd"),
			comment = c(ORCID = "0000-0001-6911-2172")),
		person(c("Zhijiang", "Ye"), 
			"Ye", 
			email = "zhijiang.ye@emory.edu", 
			role = c("aut","fnd"),
			comment = c(ORCID = "0009-0005-5464-7306")),
		person(c("Stefan", "G."),
			"Sarafianos",
			email = "stefanos.sarafianos@emory.edu",
			role = c("fnd","aut","ths"),
			comment = c(ORCID = "0000-0002-5840-154X"))
		)
Description: This package automates analysis workflow for Thermal Shift
        Analysis (TSA) data. Processing, analyzing, and visualizing
        data through both shiny applications and command lines. Package
        aims to simplify data analysis and offer front to end workflow,
        from raw data to multiple trial analysis.
License: AGPL-3
Encoding: UTF-8
LazyData: false
Testthat: true
RoxygenNote: 7.3.2
Imports: dplyr (>= 1.0.7), ggplot2 (>= 3.3.5), ggpubr (>= 0.4.0),
        magrittr (>= 2.0.3), mgcv (>= 1.8.38), readxl (>= 1.4.0),
        stringr (>= 1.4.0), tidyr (>= 1.1.4), utils (>= 4.3.1), shiny
        (>= 1.7.4.1), plotly (>= 4.10.2), shinyjs (>= 2.1.0), jsonlite
        (>= 1.8.7), rhandsontable (>= 0.3.8), openxlsx (>= 4.2.5.2),
        shinyWidgets (>= 0.7.6), minpack.lm (>= 1.2.3)
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
biocViews: Software, ShinyApps, Visualization, qPCR
DataRaw: data/qPCR_data1.rda
DataRaw2: data/qPCR_data2.rda
DataRaw3: data/Well_Information.rda
DataRaw4: data/Well_Information_Template.rda
DataRawr: data/example_tsar_data.rda
Depends: R (>= 4.3.0)
Config/testthat/edition: 3
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev libssl-dev
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 13:01:34 UTC
RemoteUrl: https://github.com/bioc/TSAR
RemoteRef: HEAD
RemoteSha: 5ead14fb1d7adc82acd0ea84b450c0ae6888df2f
NeedsCompilation: no
Packaged: 2026-07-03 17:17:31 UTC; root
Author: Xinlin Gao [aut, cre] (ORCID: <https://orcid.org/0009-0002-2518-235X>),
  William M. McFadden [aut, fnd] (ORCID:
    <https://orcid.org/0000-0001-6911-2172>),
  Zhijiang Ye Ye [aut, fnd] (ORCID:
    <https://orcid.org/0009-0005-5464-7306>),
  Stefan G. Sarafianos [fnd, aut, ths] (ORCID:
    <https://orcid.org/0000-0002-5840-154X>)
Maintainer: Xinlin Gao <candygao2015@outlook.com>