From Travis-CI to Github Actions
Minor update to enhance compatibility with R 4.0.0
Minor fix on documentation
RNA Seq validation
Random restart on Hill Climbing added to CAPRI algorithm
Minor fixes to algorithms and error model
Assignment to .GlobalEnv removed
Last stable releade with bugfix
New algorithms: Edmonds, Gabow, Chow-Liu and Prim.
New scores: PMI, CPMI, MI
A better bootstrap implementation
Implementation of maximum spanning tree algorithms.
Implementation of a noise model for cumulative phenomena.
A better implementation of remove.cycles.
New statistics available for model confidence via cross-validation routines. New algorithms based on Minimum Spanning Tree extraction.
Released in summer 2015 on our GitHUB, will replace the Bioconductor version in autumn 2015. This version is parallel, includes also the CAPRI algorithm, supports common input formats such as GISTIC (for Copy Number Variants), MAF (for mutations' annotation), supports TCGA samples editing and queries to the CBio portal. This version comes with new plotting capabilities, and a general from-scratch design. It is not compatible with previous releases.
Released in mid 2014 includes CAPRESE algorithm. It is now outdated and no more maintained.