Package: TOP
Title: TOP Constructs Transferable Model Across Gene Expression
        Platforms
Version: 1.13.0
Date: 2022-11-09
Authors@R: 
    c(
        person(
            given="Harry", family="Robertson",
            email = "harry.robertson@sydney.edu.au", role = c("aut", "cre"),
            comment = c(ORCID = "0000-0001-9203-3894")
        ),
        person(
            given="Nicholas", family= "Robertson",
            email = "nicholas.robertson@sydney.edu.au", role = c("aut")
        )
    )
Description: TOP constructs a transferable model across gene expression
        platforms for prospective experiments. Such a transferable
        model can be trained to make predictions on independent
        validation data with an accuracy that is similar to a
        re-substituted model. The TOP procedure also has the
        flexibility to be adapted to suit the most common clinical
        response variables, including linear response, binomial and Cox
        PH models.
License: GPL-3
URL: https://github.com/Harry25R/TOP
BugReports: https://github.com/Harry25R/TOP/issues
biocViews: Software, Survival, GeneExpression
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Imports: assertthat, caret, ClassifyR, directPA, doParallel, dplyr,
        ggnewscale, ggplot2, ggraph, ggrepel, ggthemes, glmnet, Hmisc,
        igraph, latex2exp, limma, magrittr, methods, plotly, pROC,
        purrr, reshape2, stats, stringr, survival, tibble, tidygraph,
        tidyr, statmod
Suggests: knitr, rmarkdown, BiocStyle, Biobase, curatedOvarianData,
        ggbeeswarm, ggsci, survminer, tidyverse
VignetteBuilder: knitr
LazyData: false
Config/pak/sysreqs: cmake libfontconfig1-dev libfreetype6-dev
        libglpk-dev make libicu-dev libpng-dev libuv1-dev libxml2-dev
        libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 13:00:48 UTC
RemoteUrl: https://github.com/bioc/TOP
RemoteRef: HEAD
RemoteSha: 391b4a30adb38bc3769e79844d36f9df4080b77a
NeedsCompilation: no
Packaged: 2026-07-03 15:45:36 UTC; root
Author: Harry Robertson [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-9203-3894>),
  Nicholas Robertson [aut]
Maintainer: Harry Robertson <harry.robertson@sydney.edu.au>
Depends: R (>= 4.1.0)