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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "TFHAZ" in publications use:'
type: software
license: Artistic-2.0
title: 'TFHAZ: Transcription Factor High Accumulation Zones'
version: 1.27.0
doi: 10.32614/CRAN.package.TFHAZ
abstract: It finds trascription factor (TF) high accumulation DNA zones, i.e., regions
  along the genome where there is a high presence of different transcription factors.
  Starting from a dataset containing the genomic positions of TF binding regions,
  for each base of the selected chromosome the accumulation of TFs is computed. Three
  different types of accumulation (TF, region and base accumulation) are available,
  together with the possibility of considering, in the single base accumulation computing,
  the TFs present not only in that single base, but also in its neighborhood, within
  a window of a given width. Two different methods for the search of TF high accumulation
  DNA zones, called "binding regions" and "overlaps", are available. In addition,
  some functions are provided in order to analyze, visualize and compare results obtained
  with different input parameters.
authors:
- family-names: Ceddia
  given-names: Gaia
  email: gaia.ceddia@polimi.it
- family-names: Marchesi
  given-names: Alberto
- family-names: Cascianelli
  given-names: Silvia
- family-names: Masseroli
  given-names: Marco
repository: https://bioc.r-universe.dev
commit: cffe5615792920ac346fc9b0448c6c57b206e834
contact:
- family-names: Ceddia
  given-names: Gaia
  email: gaia.ceddia@polimi.it