Package: TEQC
Type: Package
Title: Quality control for target capture experiments
Version: 4.35.0
Date: 2025-07-23
Author: M. Hummel, S. Bonnin, E. Lowy, G. Roma
Maintainer: Sarah Bonnin <Sarah.Bonnin@crg.eu>
Description: Target capture experiments combine hybridization-based (in
        solution or on microarrays) capture and enrichment of genomic
        regions of interest (e.g. the exome) with high throughput
        sequencing of the captured DNA fragments. This package provides
        functionalities for assessing and visualizing the quality of
        the target enrichment process, like specificity and sensitivity
        of the capture, per-target read coverage and so on.
Depends: methods, BiocGenerics (>= 0.1.0), IRanges (>= 1.13.5),
        Rsamtools, hwriter
Imports: S4Vectors, Seqinfo, GenomicRanges, Biobase (>= 2.15.1)
License: GPL (>= 2)
LazyLoad: yes
biocViews: QualityControl, Microarray, Sequencing, Genetics
Config/pak/sysreqs: libbz2-dev liblzma-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:35:02 UTC
RemoteUrl: https://github.com/bioc/TEQC
RemoteRef: HEAD
RemoteSha: d0ae113b815a6a6442f17ef539901562d966e198
NeedsCompilation: no
Packaged: 2026-07-02 07:14:17 UTC; root