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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "TEKRABber" in publications use:'
type: software
title: 'TEKRABber: An R package estimates the correlations of orthologs and transposable
  elements between two species'
version: 1.9.0
doi: 10.1101/2023.12.18.569574
abstract: TEKRABber is made to provide a user-friendly pipeline for comparing orthologs
  and transposable elements (TEs) between two species. It considers the orthology
  confidence between two species from BioMart to normalize expression counts and detect
  differentially expressed orthologs/TEs. Then it provides one to one correlation
  analysis for desired orthologs and TEs. There is also an app function to have a
  first insight on the result. Users can prepare orthologs/TEs RNA-seq expression
  data by their own preference to run TEKRABber following the data structure mentioned
  in the vignettes.
authors:
- family-names: Chen
  given-names: Yao-Chung
  email: yao-chung.chen@fu-berlin.de
  orcid: https://orcid.org/0000-0002-9927-9130
- family-names: Nowick
  given-names: Katja
  email: katja.nowick@fu-berlin.de
  orcid: https://orcid.org/0000-0003-3993-4479
preferred-citation:
  type: article
  title: Regulatory networks of KRAB zinc finger genes and transposable elements changed
    during human brain evolution and disease
  authors:
  - family-names: Chen
    given-names: Yao-Chung
    email: yao-chung.chen@fu-berlin.de
    orcid: https://orcid.org/0000-0002-9927-9130
  - family-names: Maupas
    given-names: Arnaud
  - family-names: Nowick
    given-names: Katja
    email: katja.nowick@fu-berlin.de
    orcid: https://orcid.org/0000-0003-3993-4479
  journal: bioRxiv
  year: '2023'
  doi: 10.1101/2023.12.18.569574
repository: https://bioc.r-universe.dev
repository-code: https://github.com/ferygood/TEKRABber
url: https://github.com/ferygood/TEKRABber
contact:
- family-names: Chen
  given-names: Yao-Chung
  email: yao-chung.chen@fu-berlin.de
  orcid: https://orcid.org/0000-0002-9927-9130