To cite TCGAbiolinks in publications use: Please, also consider citing:

Antonio Colaprico, Tiago Chedraoui Silva, Catharina Olsen, Luciano Garofano, Claudia Cava, Davide Garolini, Thais Sabedot, Tathiane Malta, Stefano M. Pagnotta, Isabella Castiglioni,Michele Ceccarelli, Gianluca Bontempi Houtan Noushmehr. TCGAbiolinks: An R/Bioconductor package for integrative analysis of TCGA data Nucleic Acids Research (05 May 2016) 44 (8): e71. <doi:10.1093/nar/gkv1507>)

Silva, Tiago C., et al. "TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages." F1000Research 5 (2016).

Mounir, Mohamed, et al. "New functionalities in the TCGAbiolinks package for the study and integration of cancer data from GDC and GTEx." PLoS computational biology 15.3 (2019): e1006701.

Corresponding BibTeX entries:

  @Article{,
    title = {TCGAbiolinks: An R/Bioconductor package for integrative
      analysis of TCGA data},
    author = {Antonio Colaprico and Tiago Chedraoui Silva and Catharina
      Olsen and Luciano Garofano and Claudia Cava and Davide Garolini
      and Thais Sabedot and Tathiane M. Malta and Stefano M. Pagnotta
      and Isabella Castiglioni and Michele Ceccarelli and Gianluca
      Bontempi and Houtan Noushmehr},
    journal = {Nucleic Acids Research},
    year = {2015},
    journal = {Nucleic Acids Research},
    doi = {10.1093/nar/gkv1507},
    url = {http://doi.org/10.1093/nar/gkv1507},
  }

  @Article{,
    title = {TCGA Workflow: Analyze cancer genomics and epigenomics
      data using Bioconductor packages},
    author = {{Silva} and Tiago C and {Colaprico} and {Antonio} and
      {Olsen} and {Catharina} and {D'Angelo} and {Fulvio} and
      {Bontempi} and {Gianluca} and {Ceccarelli} and {Michele} and
      {Noushmehr} and {Houtan}},
    journal = {F1000Research},
    volume = {5},
    year = {2016},
    publisher = {Faculty of 1000 Ltd},
  }

  @Article{,
    title = {New functionalities in the TCGAbiolinks package for the
      study and integration of cancer data from GDC and GTEx},
    author = {{Mounir} and {Mohamed} and {Lucchetta} and {Marta} and
      {Silva} and Tiago C and {Olsen} and {Catharina} and {Bontempi}
      and {Gianluca} and {Chen} and {Xi} and {Noushmehr} and {Houtan}
      and {Colaprico} and {Antonio} and {Papaleo} and {Elena}},
    journal = {PLoS computational biology},
    volume = {15},
    number = {3},
    pages = {e1006701},
    year = {2019},
    publisher = {Public Library of Science},
  }