# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "TCC" in publications use:'
type: software
license: GPL-2.0-only
title: 'TCC: TCC: Differential expression analysis for tag count data with robust
  normalization strategies'
version: 1.45.0
identifiers:
- type: doi
  value: 10.32614/CRAN.package.TCC
abstract: This package provides a series of functions for performing differential
  expression analysis from RNA-seq count data using robust normalization strategy
  (called DEGES). The basic idea of DEGES is that potential differentially expressed
  genes or transcripts (DEGs) among compared samples should be removed before data
  normalization to obtain a well-ranked gene list where true DEGs are top-ranked and
  non-DEGs are bottom ranked. This can be done by performing a multi-step normalization
  strategy (called DEGES for DEG elimination strategy). A major characteristic of
  TCC is to provide the robust normalization methods for several kinds of count data
  (two-group with or without replicates, multi-group/multi-factor, and so on) by virtue
  of the use of combinations of functions in depended packages.
authors:
- family-names: Sun
  given-names: Jianqiang
  email: sun@biunit.dev
- family-names: Nishiyama
  given-names: Tomoaki
  email: tomoakin@staff.kanazawa-u.ac.jp
- family-names: Shimizu
  given-names: Kentaro
- family-names: Kadota
  given-names: Koji
preferred-citation:
  type: article
  title: 'TCC: an R package for comparing tag count data with robust normalization
    strategies'
  authors:
  - family-names: J
    given-names: Sun
  - family-names: T
    given-names: Nishiyama
  - family-names: K
    given-names: Shimizu
  - family-names: K
    given-names: Kadota
  journal: BMC Bioinformatics
  volume: '14'
  year: '2013'
  start: '219'
repository: https://bioc.r-universe.dev
commit: 200654ee496d79423dcab6d0c30426edf54f7346
contact:
- family-names: Sun
  given-names: Jianqiang
  email: sun@biunit.dev
- family-names: Nishiyama
  given-names: Tomoaki
  email: tomoakin@staff.kanazawa-u.ac.jp
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