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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "TBSignatureProfiler" in publications use:'
type: software
license: MIT
title: 'TBSignatureProfiler: Profile RNA-Seq Data Using TB Pathway Signatures'
version: 1.17.1
doi: 10.1186/s12879-020-05598-z
identifiers:
- type: doi
  value: 10.32614/CRAN.package.TBSignatureProfiler
abstract: Gene signatures of TB progression, TB disease, and other TB disease states
  have been validated and published previously. This package aggregates known signatures
  and provides computational tools to enlist their usage on other datasets. The TBSignatureProfiler
  makes it easy to profile RNA-Seq data using these signatures and includes common
  signature profiling tools including ASSIGN, GSVA, and ssGSEA. Original models for
  some gene signatures are also available. A shiny app provides some functionality
  alongside for detailed command line accessibility.
authors:
- family-names: Odom
  given-names: Aubrey R.
  email: aodom@bu.edu
  orcid: https://orcid.org/0000-0001-7113-7598
- family-names: Jenkins
  given-names: David
  email: dfj@bu.edu
  orcid: https://orcid.org/0000-0002-7451-4288
- family-names: Wang
  given-names: Xutao
  email: xutaow@bu.edu
- family-names: Johnson
  given-names: W. Evan
  email: wej@bu.edu
preferred-citation:
  type: article
  title: Comparing tuberculosis gene signatures in malnourished individuals using
    the TBSignatureProfiler
  authors:
  - family-names: Johnson
    given-names: W. Evan
    email: wej@bu.edu
  - family-names: Odom
    given-names: Aubrey
  - family-names: Cintron
    given-names: Chelsie
  - family-names: Muthaiah
    given-names: Mutharaj
  - family-names: Knudsen
    given-names: Selby
  - family-names: Joseph
    given-names: Noyal
  - family-names: Babu
    given-names: Senbagavalli
  - family-names: Lakshminarayanan
    given-names: Subitha
  - family-names: Jenkins
    given-names: David F.
  - family-names: Nankya
    given-names: Ethel
  - family-names: Horsburgh
    given-names: C. Robert
  - family-names: Roy
    given-names: Gautam
  - family-names: Ellner
    given-names: Jerrold
  - family-names: Sarkar
    given-names: Sonali
  - family-names: Salgame
    given-names: Padmini
  - family-names: Hochberg
    given-names: Natasha S.
  journal: BMC Infectious Diseases
  year: '2021'
  volume: '21'
  issue: '1'
  url: https://bmcinfectdis.biomedcentral.com/articles/10.1186/s12879-020-05598-z
  doi: 10.1186/s12879-020-05598-z
  start: '106'
repository: https://bioc.r-universe.dev
repository-code: https://github.com/wejlab/TBSignatureProfiler
commit: d4c61d35e9c3a7137ccd661e1a68e186005f391a
url: https://wejlab.github.io/TBSignatureProfiler-docs/
contact:
- family-names: Odom
  given-names: Aubrey R.
  email: aodom@bu.edu
  orcid: https://orcid.org/0000-0001-7113-7598